PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013624547.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

ZF-HD

Protein Properties

Length: 133aa MW: 14260.9 Da PI: 6.915

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013624547.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	74.7	1.3e-23	54	104	10	59
ZF-HD_dimer 10 lkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 l+N Aa++Ggha+D C Efmps++ + +++++lkCaACgCH nF Rr++++ XP_013624547.1 54 LQNRAAAIGGHALDVCSEFMPSPTFTsSDPTSLKCAACGCHHNFYRRDPDD 104 78********************99899****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51523	18.491	50	101	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	7.8E-21	54	101	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	3.0E-9	54	100	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	4.3E-18	54	102	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 133 aa Download sequence Send to blast
MLEVGAMDMT SKYPPKYPKN PKLRPRFNQL NQSPSATESS NAATTSTTTQ PPSLQNRAAA 60 IGGHALDVCS EFMPSPTFTS SDPTSLKCAA CGCHHNFYRR DPDDSSLTSA AAPPSLLTSS 120 TIAEIEYQPH TVN

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269\|PubMed:16428600}.
Uniprot	TISSUE SPECIFICITY: Mostly expressed in flowers, stems and inflorescence and, to a lower extent, in leaves and stems. {ECO:0000269\|PubMed:16428600}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.
UniProt	Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013624547.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013624547.1	3e-94	PREDICTED: zinc-finger homeodomain protein 9-like
Swissprot	Q9LHF0	1e-23	ZHD9_ARATH; Zinc-finger homeodomain protein 9
Swissprot	Q9LXG0	1e-23	ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBL	A0A0D3A4Q8	1e-92	A0A0D3A4Q8_BRAOL; Uncharacterized protein
STRING	Bo1g023770.1	2e-93	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28920.1	1e-13	homeobox protein 34

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]