PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013624031.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 1069aa    MW: 120992 Da    PI: 6.2648
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013624031.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.87.2e-17197286196
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f++ ++p+ +++++rl+lp+ f++e+g++  ++ ++ +  ++g +W ++l  +kk+  + ++kGWkeFvkangL++g ++ ++  + +++++ ++
  XP_013624031.1 197 FVTFTLPPEYSTLCRLTLPNLFVKENGIS--TPAEICVLGKDGTKWPITLLLDKKG-IMSFGKGWKEFVKANGLETGFTLKLM--W-EDTTPSFS 285
                     677889999*****************998..6679***************777776.5689****************999999..5.55555555 PP

                     E CS
              B3  96 v 96 
                     +
  XP_013624031.1 286 L 286
                     5 PP
2B366.63.5e-21376468397
                     EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      ++++ ++l ++ l+lp+ f++++g+   + ++++l d  grsW + l+++ +s+ ++++ GW++F++ ngL++g f++Fkl+g+ e+++v++++
  XP_013624031.1 376 VAFVTDSSLDTDTLYLPRYFTSSNGLTR-KCRKIVLIDGGGRSWAMDLSFNESSDIFYISPGWRSFCDKNGLEAGGFFTFKLVGN-EETPVLSFC 468
                     67889999999*************9986.557***************************************************95.555888776 PP
3B352.49.6e-17534624197
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f++ ++p+d+ +++ l+lpk f++e+g++k++  ++ l  ++g +W  +l  +kk+  + l+kGWk+FvkangL++g   ++kl++ ++++++++
  XP_013624031.1 534 FITFTLPPDYATLDKLTLPKLFVKENGINKPG--EIYLLGKDGTKWLTRLLLDKKG-LMRLGKGWKDFVKANGLESGF--TLKLIW-EDATPFFS 622
                     778889*********************99766..8***************776665.568****************95..566667.77778887 PP

                     EE CS
              B3  96 vf 97 
                     ++
  XP_013624031.1 623 LC 624
                     76 PP
4B344.42.9e-14684778199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f++  +++ +l+ +r++lp +f+++  ++k++   + l  ++  +W  +l ++ ++gr+ l+kGW  F+k+n+ k+g++v+++ ++ ++++++++
  XP_013624031.1 684 FLTLAITPTSLRCNRMRLPIPFLRKSCMDKPG--VIYLLGKDDTKWMANL-IQEGDGRMKLGKGWTAFAKENEFKAGESVTLESIW-EDETPMIR 774
                     666778999999*************9666555..7***************.58888899************************999.88889*99 PP

                     EE-S CS
              B3  96 vfrk 99 
                     ++r+
  XP_013624031.1 775 FLRT 778
                     9986 PP
5B342.89.4e-14812903296
                     EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 
                     ++ ++++   k + l+lp +f++++g++k++  ++tl de+  + + +l    + g +  ++GW eF++ang+k g++++++ +++ +e+ +v+k
  XP_013624031.1 812 VTLTLKHEDVKACVLILPSQFLKANGINKHG--KITLLDENEVELSAYL--LSREGIVAVESGWGEFCEANGVKLGESFTLECIKEqDETAPVLK 902
                     55566677778899************99776..7***************..88888899***********************9988788888887 PP

                     E CS
              B3  96 v 96 
                     v
  XP_013624031.1 903 V 903
                     7 PP
6B364.22.1e-2093510042092
                      HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
              B3   20 kkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92  
                      k+f++++g+k++++ +++l++e+grsW+  l+ +++ g+ ++t+GW++F++angLk+gD+++Fkl++r +++l
  XP_013624031.1  935 KEFVRANGLKTRCG-DIVLMNEKGRSWTSALK-QRQCGKSYITRGWRSFCSANGLKAGDIFTFKLIER-GGTL 1004
                      89********9887.****************5.555555789***********************985.4434 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.47E-15191280IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.0E-15195302IPR015300DNA-binding pseudobarrel domain
CDDcd100173.04E-15195288No hitNo description
PfamPF023622.5E-15197287IPR003340B3 DNA binding domain
SMARTSM010198.7E-23197290IPR003340B3 DNA binding domain
PROSITE profilePS5086312.308197290IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.7E-21367469IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.51E-22371469IPR015300DNA-binding pseudobarrel domain
CDDcd100172.01E-18374469No hitNo description
PROSITE profilePS5086315.27374470IPR003340B3 DNA binding domain
PfamPF023622.6E-19375468IPR003340B3 DNA binding domain
SMARTSM010192.4E-26375471IPR003340B3 DNA binding domain
SuperFamilySSF1019361.65E-16528617IPR015300DNA-binding pseudobarrel domain
CDDcd100179.17E-16532625No hitNo description
Gene3DG3DSA:2.40.330.105.3E-16533630IPR015300DNA-binding pseudobarrel domain
PfamPF023621.9E-15534624IPR003340B3 DNA binding domain
PROSITE profilePS5086313.352534627IPR003340B3 DNA binding domain
SMARTSM010197.3E-24534627IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.9E-15674785IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.12E-16680781IPR015300DNA-binding pseudobarrel domain
PfamPF023624.1E-13684778IPR003340B3 DNA binding domain
SMARTSM010194.9E-19684779IPR003340B3 DNA binding domain
PROSITE profilePS5086312.562684779IPR003340B3 DNA binding domain
CDDcd100171.40E-12689777No hitNo description
Gene3DG3DSA:2.40.330.105.3E-14804897IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-15808894IPR015300DNA-binding pseudobarrel domain
CDDcd100171.19E-10810893No hitNo description
PROSITE profilePS5086310.137811907IPR003340B3 DNA binding domain
PfamPF023621.3E-12811903IPR003340B3 DNA binding domain
SMARTSM010195.3E-17811907IPR003340B3 DNA binding domain
SMARTSM010193.1E-189261011IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.6E-179341006IPR015300DNA-binding pseudobarrel domain
CDDcd100172.07E-189341007No hitNo description
PfamPF023629.1E-199351005IPR003340B3 DNA binding domain
SuperFamilySSF1019361.79E-159351009IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.6489351012IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1069 aa     Download sequence    Send to blast
MICYASRSVP SVCLDKSIKM AKSTTLLSRP QFFHTLLPGF QTQLTIPSDF FSNYIKDLET  60
TTAELKSDSS LDITWKVGRI LNDGWGDFAV ASLPCTLNID DDDEVPLNKK VKTNIYETEA  120
DSCFKAFLTD SSLHTDTLHF TSSNALTRNC SEAHSAQLSN ENMEREREED ESLIKKKLKP  180
KQRPVSYSSY SPCHKRFVTF TLPPEYSTLC RLTLPNLFVK ENGISTPAEI CVLGKDGTKW  240
PITLLLDKKG IMSFGKGWKE FVKANGLETG FTLKLMWEDT TPSFSLCCPE SACNKDEEEC  300
LESIKKQSLS IDRRIRDKPG KRKNNKEEKR SWEREKIHCG GRDVGEFEEV PTNKKVKTDS  360
HGTDAASSSL DNSCFVAFVT DSSLDTDTLY LPRYFTSSNG LTRKCRKIVL IDGGGRSWAM  420
DLSFNESSDI FYISPGWRSF CDKNGLEAGG FFTFKLVGNE ETPVLSFCPM VSIDSRSQKD  480
CFEAHSTEVS NEEEEIERER NEEETLMDIE EKKKSKPEQR PVSYSSYSPC YKRFITFTLP  540
PDYATLDKLT LPKLFVKENG INKPGEIYLL GKDGTKWLTR LLLDKKGLMR LGKGWKDFVK  600
ANGLESGFTL KLIWEDATPF FSLCCAESTS DNNEEEYLET IKKQSLSIDR RIRDKNDKEE  660
KRSWEREKIN MRGRDSTTSS QKQFLTLAIT PTSLRCNRMR LPIPFLRKSC MDKPGVIYLL  720
GKDDTKWMAN LIQEGDGRMK LGKGWTAFAK ENEFKAGESV TLESIWEDET PMIRFLRTES  780
ESSKANKKES IYMEDTESRT RDSSSEIHAR FVTLTLKHED VKACVLILPS QFLKANGINK  840
HGKITLLDEN EVELSAYLLS REGIVAVESG WGEFCEANGV KLGESFTLEC IKEQDETAPV  900
LKVLFSGGHG PSISFSVLSE SGVAFYCIEF SESSKEFVRA NGLKTRCGDI VLMNEKGRSW  960
TSALKQRQCG KSYITRGWRS FCSANGLKAG DIFTFKLIER GGTLVLRKSP SHRESKEDEG  1020
SEADEIESLS TESDSDEESN QDEKRLKMRI SIWKASSSPS RNRFVTLNS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013624031.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894331e-158AC189433.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB068H20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013624031.10.0PREDICTED: B3 domain-containing protein REM13
TrEMBLA0A3P6AB290.0A0A3P6AB29_BRAOL; Uncharacterized protein
STRINGBra000564.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137801326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24650.11e-176DNA binding;DNA binding;sequence-specific DNA binding transcription factors