PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013623973.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 417aa MW: 47236.1 Da PI: 10.0193

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013623973.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.2	2.9e-31	95	148	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH +F++ave+LGG+++AtPk +l+lm+vkgL++ hvkSHLQ+YR+ XP_013623973.1 95 PRLRWTPELHICFLQAVERLGGPDRATPKLVLQLMNVKGLSIGHVKSHLQMYRS 148 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.7E-29	91	149	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.475	91	151	IPR017930	Myb domain
SuperFamily	SSF46689	1.97E-15	92	149	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.8E-24	95	150	IPR006447	Myb domain, plants
Pfam	PF00249	4.5E-9	96	147	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence Send to blast
MDTSIQKTKK VQTSKQTTXN TAKXLENKMR SSSQSSENSK KTDNKDEEED EEERSADQSP 60 SKNSYLEENG SHHHNNDQIK KISGSVRPYN RSKTPRLRWT PELHICFLQA VERLGGPDRA 120 TPKLVLQLMN VKGLSIGHVK SHLQMYRSKK IDDTNQGDQR FSFEHRAGYT YDLRQLPMLQ 180 SFDQSRTSLG YGGGSWTGRR QHVYRSPSRG LTARDNTRTR QTLFGSQPGE RFDGVSNRIL 240 DDKNSTIWFR INSHEAAHAN NGVGEAVPRM HRSFLEGKKT FNKSWGPSLA SNPNSWTASK 300 PQSHIATTLS SNQRDNPLVA EEMENVLKKK RLLLSDDCNN SDKDLDLSLS LKVPRTHNNL 360 GDCLLEEEKE HADSKGLSLS LYSSSFAKLG QAIRKEDQNY HKKRKCSVLA SPLDLTL

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence Send to blast

MDTSIQKTKK VQTSKQTTXN TAKXLENKMR SSSQSSENSK KTDNKDEEED EEERSADQSP  60
SKNSYLEENG SHHHNNDQIK KISGSVRPYN RSKTPRLRWT PELHICFLQA VERLGGPDRA  120
TPKLVLQLMN VKGLSIGHVK SHLQMYRSKK IDDTNQGDQR FSFEHRAGYT YDLRQLPMLQ  180
SFDQSRTSLG YGGGSWTGRR QHVYRSPSRG LTARDNTRTR QTLFGSQPGE RFDGVSNRIL  240
DDKNSTIWFR INSHEAAHAN NGVGEAVPRM HRSFLEGKKT FNKSWGPSLA SNPNSWTASK  300
PQSHIATTLS SNQRDNPLVA EEMENVLKKK RLLLSDDCNN SDKDLDLSLS LKVPRTHNNL  360
GDCLLEEEKE HADSKGLSLS LYSSSFAKLG QAIRKEDQNY HKKRKCSVLA SPLDLTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	7e-17	96	150	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	7e-17	96	150	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	7e-17	96	150	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	7e-17	96	150	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013623973.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013623973.1	0.0	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC106329920
TrEMBL	A0A078IRC0	0.0	A0A078IRC0_BRANA; BnaC03g72550D protein
TrEMBL	A0A0D3B610	0.0	A0A0D3B610_BRAOL; Uncharacterized protein
STRING	Bo3g034850.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9359	21	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40260.1	1e-166	G2-like family protein