PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013623973.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | G2-like | ||||||||
Protein Properties | Length: 417aa MW: 47236.1 Da PI: 10.0193 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 99.2 | 2.9e-31 | 95 | 148 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH +F++ave+LGG+++AtPk +l+lm+vkgL++ hvkSHLQ+YR+ XP_013623973.1 95 PRLRWTPELHICFLQAVERLGGPDRATPKLVLQLMNVKGLSIGHVKSHLQMYRS 148 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-29 | 91 | 149 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.475 | 91 | 151 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.97E-15 | 92 | 149 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.8E-24 | 95 | 150 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.5E-9 | 96 | 147 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence Send to blast |
MDTSIQKTKK VQTSKQTTXN TAKXLENKMR SSSQSSENSK KTDNKDEEED EEERSADQSP 60 SKNSYLEENG SHHHNNDQIK KISGSVRPYN RSKTPRLRWT PELHICFLQA VERLGGPDRA 120 TPKLVLQLMN VKGLSIGHVK SHLQMYRSKK IDDTNQGDQR FSFEHRAGYT YDLRQLPMLQ 180 SFDQSRTSLG YGGGSWTGRR QHVYRSPSRG LTARDNTRTR QTLFGSQPGE RFDGVSNRIL 240 DDKNSTIWFR INSHEAAHAN NGVGEAVPRM HRSFLEGKKT FNKSWGPSLA SNPNSWTASK 300 PQSHIATTLS SNQRDNPLVA EEMENVLKKK RLLLSDDCNN SDKDLDLSLS LKVPRTHNNL 360 GDCLLEEEKE HADSKGLSLS LYSSSFAKLG QAIRKEDQNY HKKRKCSVLA SPLDLTL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 7e-17 | 96 | 150 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 7e-17 | 96 | 150 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 7e-17 | 96 | 150 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 7e-17 | 96 | 150 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013623973.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013623973.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC106329920 | ||||
TrEMBL | A0A078IRC0 | 0.0 | A0A078IRC0_BRANA; BnaC03g72550D protein | ||||
TrEMBL | A0A0D3B610 | 0.0 | A0A0D3B610_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g034850.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9359 | 21 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40260.1 | 1e-166 | G2-like family protein |