PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013623297.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | AP2 | ||||||||
Protein Properties | Length: 567aa MW: 63728.8 Da PI: 6.7254 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 43.8 | 6.3e-14 | 264 | 323 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +++Aa+a++ a++k+++ XP_013623297.1 264 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEDKAARAYDLAALKYWN 323 57*******************666664478446**********99************987 PP | |||||||
2 | AP2 | 48.9 | 1.6e-15 | 368 | 417 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g XP_013623297.1 368 YRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 417 9***************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 5.23E-16 | 264 | 332 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 8.0E-11 | 264 | 323 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.19E-20 | 264 | 333 | No hit | No description |
SMART | SM00380 | 2.3E-25 | 265 | 337 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.7E-14 | 265 | 331 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.597 | 265 | 331 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-6 | 266 | 277 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.14E-10 | 366 | 425 | No hit | No description |
SuperFamily | SSF54171 | 1.24E-17 | 366 | 426 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.3E-30 | 367 | 431 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.7E-18 | 367 | 425 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.269 | 367 | 425 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.9E-10 | 368 | 417 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-6 | 407 | 427 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 567 aa Download sequence Send to blast |
MAPMTNWLTF SLSPMEMLRS SDQSQFVSYD ASSAASSPYL LDNFYGWTNQ KPQEEEEAQI 60 TASMADSTIL TSFVDSQNHS QNHIPKLEDF LGDFRYSDNS QTETQDSSSL THIYDPRHHQ 120 NQTGFYSDHN HDFKTMTGFQ TAFSTNSGSE VDDSVSMSRT HLAGEYLGHV VESSGQELGF 180 IHGGANTGGV LSLGVNINNT NNHASNDNNK ISEYNYRGNN NGERIINNNN REKTDSEKEK 240 PVVAVERSDS SNKKVADTFG QRTSIYRGVT RHRWTGRYEA HLWDNSCRRE GQARKGRQVY 300 LGGYDKEDKA ARAYDLAALK YWNTAATTNF PITNYSKELE QMKHMTKQEF IASLRRKSSG 360 FSRGASMYRG VTRHHQQGRW QARIGRVAGN KDLYLGTFAT EEEAAEAYDI AAIKFRGINA 420 VTNFEMNRYD VEAIMKSALP IGGAAKRLKL SLESEQKPII GHHQLHHFQQ QHQQLQSSPN 480 DSSINFALCP SSASQSQMIP CGIPFEAASL YHHQQQQQQQ QNFFQHFPAN AASDSTDSNN 540 NSNVQSSMGL MAPNAAAEFF LWPNQSY |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Detected in inflorescence and youg floral mersitems, and in stem procambial cells. In floral mersitems, mostly expressed in the central dome. Disappears progressively from sepal primordia, but accumulates in second, third and fourth whorl organ primordia. Later, confined to occasional patches in stamens and in petal before disparearing progressively from flowers. {ECO:0000269|PubMed:15988559}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, seedlings, hypocotyl, inflorescence, siliques, and pistils. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559, ECO:0000269|PubMed:16307362}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013623297.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013623297.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 | ||||
Swissprot | Q52QU2 | 0.0 | AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6 | ||||
TrEMBL | A0A0D3B0I4 | 0.0 | A0A0D3B0I4_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g006680.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3333 | 27 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10510.2 | 0.0 | AINTEGUMENTA-like 6 |
Publications ? help Back to Top | |||
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