PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013622889.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 233aa MW: 25919.9 Da PI: 6.8003 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.8 | 0.00047 | 28 | 75 | 1 | 52 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 +r ++ rEr R+++N+ f eL + l + ++ Ka++L +A++++k XP_013622889.1 28 KRINKAVRERLKREHLNELFIELADSLELN----QQNSGKASVLCEATRFLK 75 689999*********************997....344556667777776665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 7.53E-5 | 25 | 76 | No hit | No description |
PROSITE profile | PS50888 | 11.191 | 27 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.8E-7 | 27 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.53E-10 | 28 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MGSKTPSTST HEANASVDER SRKGKVPKRI NKAVRERLKR EHLNELFIEL ADSLELNQQN 60 SGKASVLCEA TRFLKDVFGE IESLRKEHTS LLSESNYVTT EKNELKEETS VLESEISRLQ 120 SEIEAKVNQS KPDLNTSPAP EYHHHHHYQQ HAELASQFSG LPIFQGAAGY QQSSAATPPG 180 ATVLVLPMQP DLQTQAPLMY NSSNVSKPCP RYANAADSSW PSRLLGERLK ANE |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013622889.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353385 | 0.0 | AK353385.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-41-O18. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013622889.1 | 1e-173 | PREDICTED: transcription factor bHLH47 | ||||
Swissprot | Q9SN74 | 1e-127 | BH047_ARATH; Transcription factor bHLH47 | ||||
TrEMBL | A0A0D3BGG4 | 1e-171 | A0A0D3BGG4_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g114950.1 | 1e-172 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11720 | 23 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47640.3 | 1e-118 | bHLH family protein |