PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013622602.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 329aa MW: 38183.2 Da PI: 9.6557 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.5 | 1.1e-17 | 5 | 96 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ff +l+ s++ +++rl++p kf+++++ + s+ + l+ ++g +W+v l+ + +++++++GW+eFv+ ++ g +vF+++g+s f v + XP_013622602.1 5 FFHKLIFSSTIQEKRLRVPDKFVRRFKDE--LSVAVALTVPDGHVWRVGLRKADNNNKIWFQDGWQEFVDRYSIRIGYLLVFRYEGNSAF--SVYI 96 899999********************855..99*****************88888888****************************9999..5544 PP | |||||||
2 | B3 | 52.6 | 8.5e-17 | 232 | 325 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f vl ps+ + ++++lp fae++ +g++ + +++ ++ ++W v++ k gr +++GW eF +n+L egD++ F+l ++++f l+v XP_013622602.1 232 FRVVLRPSYLYRGCIMYLPSGFAEKYlSGIS-GFIKV---QLGEKQWPVRC--LYKAGRAKFSQGWYEFTVENNLGEGDVCAFELLRTRDFVLKV 320 677899********************84442.43344...4677*******..666666779************************99******* PP EEE-S CS B3 95 kvfrk 99 ++fr XP_013622602.1 321 TAFRV 325 99985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.3E-22 | 3 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.49E-22 | 3 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 6.4E-17 | 5 | 100 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.56E-21 | 5 | 98 | No hit | No description |
PROSITE profile | PS50863 | 14.677 | 5 | 100 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.7E-15 | 5 | 96 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-22 | 224 | 325 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.14E-21 | 225 | 326 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.13E-20 | 230 | 324 | No hit | No description |
SMART | SM01019 | 9.3E-21 | 232 | 326 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.421 | 232 | 326 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.2E-15 | 232 | 325 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MPRPFFHKLI FSSTIQEKRL RVPDKFVRRF KDELSVAVAL TVPDGHVWRV GLRKADNNNK 60 IWFQDGWQEF VDRYSIRIGY LLVFRYEGNS AFSVYIYNLP HSEINYHSTG LMDSASQNNH 120 FKRPRLFEDL EDEDAETLHT TTPAIQSFFT GPVKPEEATP TQTSKVPKKR GRKKKNADHP 180 EEVNSSAPRD DDPESRSKFY ESASARKRTV NAEERERAIN AAKTFEPTNP FFRVVLRPSY 240 LYRGCIMYLP SGFAEKYLSG ISGFIKVQLG EKQWPVRCLY KAGRAKFSQG WYEFTVENNL 300 GEGDVCAFEL LRTRDFVLKV TAFRVNEYV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 3e-90 | 198 | 329 | 15 | 146 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 3e-90 | 198 | 329 | 15 | 146 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and at lower levels in aerial parts. {ECO:0000269|PubMed:12114624}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013622602.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY517929 | 0.0 | AY517929.1 Brassica rapa cultivar Kwonsim reduced vernalization response 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013622602.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor VRN1-like | ||||
Swissprot | Q8L3W1 | 0.0 | VRN1_ARATH; B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | A0A0D3BC30 | 0.0 | A0A0D3BC30_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g071890.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1124 | 28 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 0.0 | B3 family protein |
Publications ? help Back to Top | |||
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