PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013622498.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

CPP

Protein Properties

Length: 664aa MW: 73391.8 Da PI: 5.8796

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013622498.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	51	2.9e-16	387	425	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+CnCkkskClk+YCeCfaag++C e C+C dC+Nk XP_013622498.1 387 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCVDCFNKP 425 689**********************************96 PP
2	TCR	52.1	1.3e-16	473	511	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeC+++g+ Cs +C+Ce+CkN XP_013622498.1 473 RHKRGCNCKKSNCLKKYCECYQSGVGCSINCRCEGCKNA 511 589***********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	2.4E-19	386	427	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	37.394	387	513	IPR005172	CRC domain
Pfam	PF03638	7.3E-12	389	424	IPR005172	CRC domain
SMART	SM01114	4.2E-17	473	514	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	6.2E-12	475	511	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 664 aa Download sequence Send to blast
MDNENSQKEP ASKIETPTPK SKFEDSPVFN FINNLSPFEP VKSFSSAQTF SSLNFTSPPP 60 VFASPHPNFH RESRFFRCQH SVDRSKALGD GSVSKEDREV DLNKDATLED EEEEDTETSC 120 ELPQILSSDG QSPPHHGEDI VTQTLLPPSD PPLGEDNNGS SMNRLQKIPD SQEEENGTPD 180 SRRLMADAAA ELLVFRSPND SEAFTCLVDK ISSSERRFFA GVKHHHIIPA NGSSNDNEPL 240 AVVPNQLVSN VHRGSMRRRC LDFEVPGKRK KDDDQQTVCD NNKPESSSSK CVVPGIGLHL 300 NAIAMASRNT KISITHEYSS SEEVQNTFSG SITPVHSQDT VPETLDQAES QPGEEAPKAL 360 VFEELIPDSL QKKKQVLEGG EGEGESSCKR CNCKKSKCLK LYCECFAAGV YCIEPCSCVD 420 CFNKPIHEDT VLATRKQIES RNPLAFAPKV IRNSDSSIMD TSDDASKTPA SARHKRGCNC 480 KKSNCLKKYC ECYQSGVGCS INCRCEGCKN AFGRKDAYLH TIMESKQEDD HETYEKRTEK 540 IQQNSKEVEQ NPQPSTPLPP YRNKLPPTQF FLGAGSSSFR KPDCDVTQSM NEKKSLETVT 600 EDKTEIMPDI LNTSPIKANS PNSKRVSPAH IGPSEPGSIL GKRSNGRKLI LRSIPAFPSL 660 NPNQ

Sequence ? help Back to Top

Protein Sequence Length: 664 aa Download sequence Send to blast

MDNENSQKEP ASKIETPTPK SKFEDSPVFN FINNLSPFEP VKSFSSAQTF SSLNFTSPPP  60
VFASPHPNFH RESRFFRCQH SVDRSKALGD GSVSKEDREV DLNKDATLED EEEEDTETSC  120
ELPQILSSDG QSPPHHGEDI VTQTLLPPSD PPLGEDNNGS SMNRLQKIPD SQEEENGTPD  180
SRRLMADAAA ELLVFRSPND SEAFTCLVDK ISSSERRFFA GVKHHHIIPA NGSSNDNEPL  240
AVVPNQLVSN VHRGSMRRRC LDFEVPGKRK KDDDQQTVCD NNKPESSSSK CVVPGIGLHL  300
NAIAMASRNT KISITHEYSS SEEVQNTFSG SITPVHSQDT VPETLDQAES QPGEEAPKAL  360
VFEELIPDSL QKKKQVLEGG EGEGESSCKR CNCKKSKCLK LYCECFAAGV YCIEPCSCVD  420
CFNKPIHEDT VLATRKQIES RNPLAFAPKV IRNSDSSIMD TSDDASKTPA SARHKRGCNC  480
KKSNCLKKYC ECYQSGVGCS INCRCEGCKN AFGRKDAYLH TIMESKQEDD HETYEKRTEK  540
IQQNSKEVEQ NPQPSTPLPP YRNKLPPTQF FLGAGSSSFR KPDCDVTQSM NEKKSLETVT  600
EDKTEIMPDI LNTSPIKANS PNSKRVSPAH IGPSEPGSIL GKRSNGRKLI LRSIPAFPSL  660
NPNQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	7e-17	391	510	14	120	Protein lin-54 homolog
5fd3_B	7e-17	391	510	14	120	Protein lin-54 homolog
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	256	270	RRRCLDFEVPGKRKK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed at the first stage of pollen development in uninucleate microspores and bicellular pollen but not in tricellular and mature pollen. {ECO:0000269\|PubMed:18057042}.
Uniprot	TISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers with highest levels in developing ovules and microspores. {ECO:0000269\|PubMed:10769244, ECO:0000269\|PubMed:10769245, ECO:0000269\|PubMed:18057042}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable floral-specific cell division component, required for proper organ formation in flowers. Regulates the floral meristem cell division and the inflorescence meristem organization. Plays a role in development of both male and female reproductive tissues. {ECO:0000269\|PubMed:10769244, ECO:0000269\|PubMed:10769245, ECO:0000269\|PubMed:9043081, ECO:0000269\|PubMed:9725857}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013622498.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013622498.1	0.0	PREDICTED: CRC domain-containing protein TSO1-like isoform X2
Swissprot	Q9LUI3	0.0	TSO1_ARATH; CRC domain-containing protein TSO1
TrEMBL	A0A0D3BCT7	0.0	A0A0D3BCT7_BRAOL; Uncharacterized protein
STRING	Bo3g081390.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	0.0	Tesmin/TSO1-like CXC domain-containing protein

Publications ? help Back to Top
Lu T,Dou Y,Zhang C Fuzzy clustering of CPP family in plants with evolution and interaction analyses. BMC Bioinformatics, 2013. 14 Suppl 13: p. S10 [PMID:24268301] Xie W, et al. Exploring potential new floral organ morphogenesis genes of Arabidopsis thaliana using systems biology approach. Front Plant Sci, 2015. 6: p. 829 [PMID:26528302] Wang W,Sijacic P,Xu P,Lian H,Liu Z Arabidopsis TSO1 and MYB3R1 form a regulatory module to coordinate cell proliferation with differentiation in shoot and root. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(13): p. E3045-E3054 [PMID:29535223]