PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013622497.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | CPP | ||||||||
Protein Properties | Length: 675aa MW: 74683.3 Da PI: 6.0603 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 50.9 | 3e-16 | 387 | 425 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+CnCkkskClk+YCeCfaag++C e C+C dC+Nk XP_013622497.1 387 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCVDCFNKP 425 689**********************************96 PP | |||||||
2 | TCR | 52.1 | 1.3e-16 | 473 | 511 | 1 | 39 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeC+++g+ Cs +C+Ce+CkN XP_013622497.1 473 RHKRGCNCKKSNCLKKYCECYQSGVGCSINCRCEGCKNA 511 589***********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 2.4E-19 | 386 | 427 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 37.394 | 387 | 513 | IPR005172 | CRC domain |
Pfam | PF03638 | 7.4E-12 | 389 | 424 | IPR005172 | CRC domain |
SMART | SM01114 | 4.2E-17 | 473 | 514 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 6.4E-12 | 475 | 511 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 675 aa Download sequence Send to blast |
MDNENSQKEP ASKIETPTPK SKFEDSPVFN FINNLSPFEP VKSFSSAQTF SSLNFTSPPP 60 VFASPHPNFH RESRFFRCQH SVDRSKALGD GSVSKEDREV DLNKDATLED EEEEDTETSC 120 ELPQILSSDG QSPPHHGEDI VTQTLLPPSD PPLGEDNNGS SMNRLQKIPD SQEEENGTPD 180 SRRLMADAAA ELLVFRSPND SEAFTCLVDK ISSSERRFFA GVKHHHIIPA NGSSNDNEPL 240 AVVPNQLVSN VHRGSMRRRC LDFEVPGKRK KDDDQQTVCD NNKPESSSSK CVVPGIGLHL 300 NAIAMASRNT KISITHEYSS SEEVQNTFSG SITPVHSQDT VPETLDQAES QPGEEAPKAL 360 VFEELIPDSL QKKKQVLEGG EGEGESSCKR CNCKKSKCLK LYCECFAAGV YCIEPCSCVD 420 CFNKPIHEDT VLATRKQIES RNPLAFAPKV IRNSDSSIMD TSDDASKTPA SARHKRGCNC 480 KKSNCLKKYC ECYQSGVGCS INCRCEGCKN AFGRKDAYLH TIMESKQEDD HETYEKRTEK 540 IQQNSKEVEQ NPQPSTPLPP YRNLVVHQPF LSRNKLPPTQ FFLGAGSSSF RKPDCDVTQS 600 MNEKKSLETV TEDKTEIMPD ILNTSPIKAN SPNSKRVSPA HIGPSEPGSI LGKRSNGRKL 660 ILRSIPAFPS LNPNQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 8e-17 | 391 | 510 | 14 | 120 | Protein lin-54 homolog |
5fd3_B | 8e-17 | 391 | 510 | 14 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 256 | 270 | RRRCLDFEVPGKRKK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed at the first stage of pollen development in uninucleate microspores and bicellular pollen but not in tricellular and mature pollen. {ECO:0000269|PubMed:18057042}. | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers with highest levels in developing ovules and microspores. {ECO:0000269|PubMed:10769244, ECO:0000269|PubMed:10769245, ECO:0000269|PubMed:18057042}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable floral-specific cell division component, required for proper organ formation in flowers. Regulates the floral meristem cell division and the inflorescence meristem organization. Plays a role in development of both male and female reproductive tissues. {ECO:0000269|PubMed:10769244, ECO:0000269|PubMed:10769245, ECO:0000269|PubMed:9043081, ECO:0000269|PubMed:9725857}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013622497.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013622497.1 | 0.0 | PREDICTED: CRC domain-containing protein TSO1-like isoform X1 | ||||
Swissprot | Q9LUI3 | 0.0 | TSO1_ARATH; CRC domain-containing protein TSO1 | ||||
TrEMBL | A0A0D3BCT7 | 0.0 | A0A0D3BCT7_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g081390.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1467 | 28 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22780.1 | 0.0 | Tesmin/TSO1-like CXC domain-containing protein |
Publications ? help Back to Top | |||
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