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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_013622497.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
CPP |
Protein Properties |
Length: 675aa MW: 74683.3 Da PI: 6.0603 |
Description |
CPP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_013622497.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | TCR | 50.9 | 3e-16 | 387 | 425 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40
++k+CnCkkskClk+YCeCfaag++C e C+C dC+Nk
XP_013622497.1 387 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCVDCFNKP 425
689**********************************96 PP
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2 | TCR | 52.1 | 1.3e-16 | 473 | 511 | 1 | 39 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39
++k+gCnCkks+ClkkYCeC+++g+ Cs +C+Ce+CkN
XP_013622497.1 473 RHKRGCNCKKSNCLKKYCECYQSGVGCSINCRCEGCKNA 511
589***********************************7 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 675 aa
Download sequence Send
to blast |
MDNENSQKEP ASKIETPTPK SKFEDSPVFN FINNLSPFEP VKSFSSAQTF SSLNFTSPPP 60 VFASPHPNFH RESRFFRCQH SVDRSKALGD GSVSKEDREV DLNKDATLED EEEEDTETSC 120 ELPQILSSDG QSPPHHGEDI VTQTLLPPSD PPLGEDNNGS SMNRLQKIPD SQEEENGTPD 180 SRRLMADAAA ELLVFRSPND SEAFTCLVDK ISSSERRFFA GVKHHHIIPA NGSSNDNEPL 240 AVVPNQLVSN VHRGSMRRRC LDFEVPGKRK KDDDQQTVCD NNKPESSSSK CVVPGIGLHL 300 NAIAMASRNT KISITHEYSS SEEVQNTFSG SITPVHSQDT VPETLDQAES QPGEEAPKAL 360 VFEELIPDSL QKKKQVLEGG EGEGESSCKR CNCKKSKCLK LYCECFAAGV YCIEPCSCVD 420 CFNKPIHEDT VLATRKQIES RNPLAFAPKV IRNSDSSIMD TSDDASKTPA SARHKRGCNC 480 KKSNCLKKYC ECYQSGVGCS INCRCEGCKN AFGRKDAYLH TIMESKQEDD HETYEKRTEK 540 IQQNSKEVEQ NPQPSTPLPP YRNLVVHQPF LSRNKLPPTQ FFLGAGSSSF RKPDCDVTQS 600 MNEKKSLETV TEDKTEIMPD ILNTSPIKAN SPNSKRVSPA HIGPSEPGSI LGKRSNGRKL 660 ILRSIPAFPS LNPNQ
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 256 | 270 | RRRCLDFEVPGKRKK |
Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Expressed at the first stage of pollen development in uninucleate microspores and bicellular pollen but not in tricellular and mature pollen. {ECO:0000269|PubMed:18057042}. |
Uniprot | TISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers with highest levels in developing ovules and microspores. {ECO:0000269|PubMed:10769244, ECO:0000269|PubMed:10769245, ECO:0000269|PubMed:18057042}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable floral-specific cell division component, required for proper organ formation in flowers. Regulates the floral meristem cell division and the inflorescence meristem organization. Plays a role in development of both male and female reproductive tissues. {ECO:0000269|PubMed:10769244, ECO:0000269|PubMed:10769245, ECO:0000269|PubMed:9043081, ECO:0000269|PubMed:9725857}. |
Publications
? help Back to Top |
- Lu T,Dou Y,Zhang C
Fuzzy clustering of CPP family in plants with evolution and interaction analyses. BMC Bioinformatics, 2013. 14 Suppl 13: p. S10 [PMID:24268301] - Xie W, et al.
Exploring potential new floral organ morphogenesis genes of Arabidopsis thaliana using systems biology approach. Front Plant Sci, 2015. 6: p. 829 [PMID:26528302] - Wang W,Sijacic P,Xu P,Lian H,Liu Z
Arabidopsis TSO1 and MYB3R1 form a regulatory module to coordinate cell proliferation with differentiation in shoot and root. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(13): p. E3045-E3054 [PMID:29535223]
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