PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013622281.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | AP2 | ||||||||
Protein Properties | Length: 427aa MW: 46929.3 Da PI: 8.8948 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.1 | 3.9e-17 | 65 | 124 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n+ k+ k+++lg ++ +e Aa+a++ a++k++g XP_013622281.1 65 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 124 57*******************766644468557*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.5E-13 | 65 | 124 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.58E-17 | 65 | 133 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.8E-26 | 66 | 138 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.126 | 66 | 132 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-15 | 66 | 133 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-5 | 67 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-5 | 114 | 134 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 427 aa Download sequence Send to blast |
MASMSSPDQG PKTEAGGGGE SSENVSASDQ MLLYRSFKKA KKERGCTAKE RISKMPPCTA 60 GKRSSIYRGV TRHRWTGRYE AHLWDKSTWN QNQNKKGKQV YLGAYDDEEA AARAYDLAAL 120 KYWGPGTLIN FPVTDYSRDL EEMQSLSREE YLATLRRKSS GFSRGIAKYR GLQSRWEASA 180 SRMPGPEYFS NLHYGDERGA EGDFLGSFCL ERKIDLTGYI KWWGVNKPGQ PESSSKASED 240 AKVEDAGTEL KTLEHASQAT EPYKAPNFGV HHGTQRKGKQ ITSPSSTSSA LSILSASPAY 300 KSLEEKVMKI QESSSTREND ENANRNINSI EKSHGKEIEK PPVVSHGVSL GSGGGVAPAA 360 AALSLQKSMY PLASLLTAPL LSNYNTLDPL GEPILWTPFL HPGSSHTLEV TKTETSCSTY 420 SYLPQEK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013622281.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353534 | 0.0 | AK353534.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-50-D01. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013622281.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710 isoform X2 | ||||
Swissprot | Q8GWK2 | 0.0 | AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710 | ||||
TrEMBL | A0A0D3B6A2 | 0.0 | A0A0D3B6A2_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g035770.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41710.1 | 0.0 | AP2 family protein |