PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013622280.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family AP2
Protein Properties Length: 432aa    MW: 47554 Da    PI: 9.0425
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013622280.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.9e-1765124155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  ++n+   k+ k+++lg ++ +e Aa+a++ a++k++g
  XP_013622280.1  65 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 124
                     57*******************766644468557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.6E-1365124IPR001471AP2/ERF domain
SuperFamilySSF541714.64E-1765133IPR016177DNA-binding domain
SMARTSM003803.8E-2666138IPR001471AP2/ERF domain
PROSITE profilePS5103220.12666132IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-1566133IPR001471AP2/ERF domain
PRINTSPR003674.3E-56778IPR001471AP2/ERF domain
PRINTSPR003674.3E-5114134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MASMSSPDQG PKTEAGGGGE SSENVSASDQ MLLYRSFKKA KKERGCTAKE RISKMPPCTA  60
GKRSSIYRGV TRHRWTGRYE AHLWDKSTWN QNQNKKGKQV YLGAYDDEEA AARAYDLAAL  120
KYWGPGTLIN FPVTDYSRDL EEMQSLSREE YLATLRRYTF GRKSSGFSRG IAKYRGLQSR  180
WEASASRMPG PEYFSNLHYG DERGAEGDFL GSFCLERKID LTGYIKWWGV NKPGQPESSS  240
KASEDAKVED AGTELKTLEH ASQATEPYKA PNFGVHHGTQ RKGKQITSPS STSSALSILS  300
ASPAYKSLEE KVMKIQESSS TRENDENANR NINSIEKSHG KEIEKPPVVS HGVSLGSGGG  360
VAPAAAALSL QKSMYPLASL LTAPLLSNYN TLDPLGEPIL WTPFLHPGSS HTLEVTKTET  420
SCSTYSYLPQ EK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013622280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3535340.0AK353534.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-50-D01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013622280.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710 isoform X1
SwissprotQ8GWK20.0AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A0D3B6A20.0A0A0D3B6A2_BRAOL; Uncharacterized protein
STRINGBo3g035770.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108152433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.20.0AP2 family protein