PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013622110.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 486aa MW: 53585.8 Da PI: 8.5956

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013622110.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	58.1	1.6e-18	263	312	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f++Lr+l+P++ ++K +Ka+ L +++eYI+ Lq XP_013622110.1 263 RSKHSATEQRRRSKINDRFQKLRQLIPNS----DQKRDKASFLLEVIEYIQFLQ 312 889***********************9....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	2.5E-23	259	332	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.479	261	311	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.51E-19	262	331	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.64E-15	263	314	No hit	No description
Pfam	PF00010	5.8E-16	263	312	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.9E-13	267	317	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence Send to blast
MELPQPRPFK AQGREPTHDF LSLCSHSTVQ TDPKPTPSSS HGSHLKTHDF LQPLESVGGS 60 KEETSKIDTT FEPPAPSPPL KHVLPGGIGT YTISSTPYFH NHQRVPKPEL SPPMMFPVSG 120 GGGVERNVAD AAAVASGFTM WDESGSGTKG QTRKENNAGE RANIRDAATT IGQWPAQSLT 180 NNNPLSGFSS RSSSQGSGLK SQSFMDMIRS AKGTSQDDDL DDEDDFVMKK ESSSTSQIPT 240 VDMRVKAEAR GAGNNDPKMN TPRSKHSATE QRRRSKINDR FQKLRQLIPN SDQKRDKASF 300 LLEVIEYIQF LQEKTSKCET PYQGWNQEPA KLLNWQKNNQ QLVPEGTVGF APKLKEEKNN 360 IPILAPAETL NRVTPFPLLV QSNSLFCPVT QLNARVASSE TAEPSPSSRS HTQPLKEEEE 420 EEVHEGNISI SSVYSQGLVK RLREALEKSG VDLTKATISV EIELAKRSSE VKQTRRPKRL 480 KTCNTS

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence Send to blast

MELPQPRPFK AQGREPTHDF LSLCSHSTVQ TDPKPTPSSS HGSHLKTHDF LQPLESVGGS  60
KEETSKIDTT FEPPAPSPPL KHVLPGGIGT YTISSTPYFH NHQRVPKPEL SPPMMFPVSG  120
GGGVERNVAD AAAVASGFTM WDESGSGTKG QTRKENNAGE RANIRDAATT IGQWPAQSLT  180
NNNPLSGFSS RSSSQGSGLK SQSFMDMIRS AKGTSQDDDL DDEDDFVMKK ESSSTSQIPT  240
VDMRVKAEAR GAGNNDPKMN TPRSKHSATE QRRRSKINDR FQKLRQLIPN SDQKRDKASF  300
LLEVIEYIQF LQEKTSKCET PYQGWNQEPA KLLNWQKNNQ QLVPEGTVGF APKLKEEKNN  360
IPILAPAETL NRVTPFPLLV QSNSLFCPVT QLNARVASSE TAEPSPSSRS HTQPLKEEEE  420
EEVHEGNISI SSVYSQGLVK RLREALEKSG VDLTKATISV EIELAKRSSE VKQTRRPKRL  480
KTCNTS

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269\|PubMed:15680330}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013622110.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC241004	1e-170	AC241004.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB026J02, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013622110.1	0.0	PREDICTED: transcription factor BIM1-like isoform X4
Swissprot	Q9LEZ3	0.0	BIM1_ARATH; Transcription factor BIM1
TrEMBL	A0A0D3B084	0.0	A0A0D3B084_BRAOL; Uncharacterized protein
STRING	Bo3g004690.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.4	0.0	bHLH family protein

Publications ? help Back to Top
Liang T, et al. UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis. Dev. Cell, 2018. 44(4): p. 512-523.e5 [PMID:29398622]