PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013622107.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 487aa MW: 53656.9 Da PI: 8.5956

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013622107.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	58.1	1.6e-18	264	313	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f++Lr+l+P++ ++K +Ka+ L +++eYI+ Lq XP_013622107.1 264 RSKHSATEQRRRSKINDRFQKLRQLIPNS----DQKRDKASFLLEVIEYIQFLQ 313 889***********************9....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	2.5E-23	260	333	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.479	262	312	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.51E-19	263	332	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.8E-16	264	313	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.59E-15	264	315	No hit	No description
SMART	SM00353	2.9E-13	268	318	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence Send to blast
MELPQPRPFK AQGREPTHDF LSLCSHSTVQ TDPKPTPSSS HGSHLKTHDF LQPLESVGGS 60 KEETSKIDTT FEPPAPSPPL KHVLPGGIGT YTISSTPYFH NHQRVPKPEL SPPMMFPVSG 120 GGGVERNVAD AAAVASGFTM WDESGSGTKG QTRKENNAGE RANIRADAAT TIGQWPAQSL 180 TNNNPLSGFS SRSSSQGSGL KSQSFMDMIR SAKGTSQDDD LDDEDDFVMK KESSSTSQIP 240 TVDMRVKAEA RGAGNNDPKM NTPRSKHSAT EQRRRSKIND RFQKLRQLIP NSDQKRDKAS 300 FLLEVIEYIQ FLQEKTSKCE TPYQGWNQEP AKLLNWQKNN QQLVPEGTVG FAPKLKEEKN 360 NIPILAPAET LNRVTPFPLL VQSNSLFCPV TQLNARVASS ETAEPSPSSR SHTQPLKEEE 420 EEEVHEGNIS ISSVYSQGLV KRLREALEKS GVDLTKATIS VEIELAKRSS EVKQTRRPKR 480 LKTCNTS

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence Send to blast

MELPQPRPFK AQGREPTHDF LSLCSHSTVQ TDPKPTPSSS HGSHLKTHDF LQPLESVGGS  60
KEETSKIDTT FEPPAPSPPL KHVLPGGIGT YTISSTPYFH NHQRVPKPEL SPPMMFPVSG  120
GGGVERNVAD AAAVASGFTM WDESGSGTKG QTRKENNAGE RANIRADAAT TIGQWPAQSL  180
TNNNPLSGFS SRSSSQGSGL KSQSFMDMIR SAKGTSQDDD LDDEDDFVMK KESSSTSQIP  240
TVDMRVKAEA RGAGNNDPKM NTPRSKHSAT EQRRRSKIND RFQKLRQLIP NSDQKRDKAS  300
FLLEVIEYIQ FLQEKTSKCE TPYQGWNQEP AKLLNWQKNN QQLVPEGTVG FAPKLKEEKN  360
NIPILAPAET LNRVTPFPLL VQSNSLFCPV TQLNARVASS ETAEPSPSSR SHTQPLKEEE  420
EEEVHEGNIS ISSVYSQGLV KRLREALEKS GVDLTKATIS VEIELAKRSS EVKQTRRPKR  480
LKTCNTS

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269\|PubMed:15680330}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013622107.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC241004	1e-170	AC241004.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB026J02, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013622107.1	0.0	PREDICTED: transcription factor BIM1-like isoform X1
Swissprot	Q9LEZ3	0.0	BIM1_ARATH; Transcription factor BIM1
TrEMBL	A0A0D3B084	0.0	A0A0D3B084_BRAOL; Uncharacterized protein
STRING	Bo3g004690.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6967	27	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.4	0.0	bHLH family protein

Publications ? help Back to Top
Liang T, et al. UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis. Dev. Cell, 2018. 44(4): p. 512-523.e5 [PMID:29398622]