PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013621804.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | GRAS | ||||||||
Protein Properties | Length: 445aa MW: 49650.7 Da PI: 6.4498 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 522.3 | 1.7e-159 | 56 | 442 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lLl+cA++v+sg+l++a+a+L++ls l+sp gd+mqR+aayfteALa+r+++s+++lykal++++t+++n+see+++++lf++++Pilk+s+ XP_013621804.1 56 LIHLLLTCANHVASGSLQNANAALEQLSLLSSPGGDTMQRVAAYFTEALANRILKSWPGLYKALNATQTRTSNVSEEVHVRRLFFDMFPILKVSY 150 689******************************************************************************************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190 l++N+aIlea+ege++vH+iD+d+s+++QW+aL+qa++sRp+gpp+lRiTgv++ +ke l ++++rL + Ae+l++pf+fn+ v+++le+l+ XP_013621804.1 151 LLTNRAILEAMEGEKMVHVIDLDASEPAQWLALIQAFNSRPDGPPHLRITGVHH----QKEVLDQVAHRLIEEAEKLDIPFQFNP-VVSSLECLN 240 ******************************************************....9**************************.799****** PP GRAS 191 leeLrvkpgEalaVnlvlqlhrll................desvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267 +e+Lrvk+gEalaV++vlqlh++l ++s++l++ ++d++L+++++lsPk++vv+eq++dhn+++ +er+le+l++y+al XP_013621804.1 241 VEQLRVKTGEALAVSSVLQLHNFLasdvtnnnghslsgdsASSLPLSNsgKIDSFLNAIWGLSPKIIVVTEQDSDHNGSTVMERLLESLYTYAAL 335 **************************************9966666665569999***************************************** PP GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362 fd+le+k+pr+s++r+kvE++l+g+ei+n++aceg+errerhe+lekW++r++ aGF++vpls++a+ qa++ll+ +++dgyr++eesg++v++W XP_013621804.1 336 FDCLETKVPRTSQDRMKVEKMLFGEEIKNIIACEGSERRERHEKLEKWSQRIDLAGFGNVPLSYYAMLQARRLLQGYGFDGYRIKEESGCAVICW 430 *********************************************************************************************** PP GRAS 363 kdrpLvsvSaWr 374 +drpL+svSaWr XP_013621804.1 431 QDRPLYSVSAWR 442 ***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 61.897 | 30 | 422 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.7E-157 | 56 | 442 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 445 aa Download sequence Send to blast |
MVVMFQEDNG TSSVASSPLQ VFSTMSLARP TLLPSPSSSP FHSLKDLKPE ERGLYLIHLL 60 LTCANHVASG SLQNANAALE QLSLLSSPGG DTMQRVAAYF TEALANRILK SWPGLYKALN 120 ATQTRTSNVS EEVHVRRLFF DMFPILKVSY LLTNRAILEA MEGEKMVHVI DLDASEPAQW 180 LALIQAFNSR PDGPPHLRIT GVHHQKEVLD QVAHRLIEEA EKLDIPFQFN PVVSSLECLN 240 VEQLRVKTGE ALAVSSVLQL HNFLASDVTN NNGHSLSGDS ASSLPLSNSG KIDSFLNAIW 300 GLSPKIIVVT EQDSDHNGST VMERLLESLY TYAALFDCLE TKVPRTSQDR MKVEKMLFGE 360 EIKNIIACEG SERRERHEKL EKWSQRIDLA GFGNVPLSYY AMLQARRLLQ GYGFDGYRIK 420 EESGCAVICW QDRPLYSVSA WRCKK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 4e-71 | 39 | 441 | 1 | 377 | Protein SCARECROW |
5b3h_D | 4e-71 | 39 | 441 | 1 | 377 | Protein SCARECROW |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013621804.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189301 | 0.0 | AC189301.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB030D08, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013621804.1 | 0.0 | PREDICTED: scarecrow-like protein 3 | ||||
Swissprot | Q9LPR8 | 0.0 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | A0A0D3BMF7 | 0.0 | A0A0D3BMF7_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g179450.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4098 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 0.0 | scarecrow-like 3 |
Publications ? help Back to Top | |||
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