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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_013621804.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
GRAS |
Protein Properties |
Length: 445aa MW: 49650.7 Da PI: 6.4498 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_013621804.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 522.3 | 1.7e-159 | 56 | 442 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95
l++lLl+cA++v+sg+l++a+a+L++ls l+sp gd+mqR+aayfteALa+r+++s+++lykal++++t+++n+see+++++lf++++Pilk+s+
XP_013621804.1 56 LIHLLLTCANHVASGSLQNANAALEQLSLLSSPGGDTMQRVAAYFTEALANRILKSWPGLYKALNATQTRTSNVSEEVHVRRLFFDMFPILKVSY 150
689******************************************************************************************** PP
GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
l++N+aIlea+ege++vH+iD+d+s+++QW+aL+qa++sRp+gpp+lRiTgv++ +ke l ++++rL + Ae+l++pf+fn+ v+++le+l+
XP_013621804.1 151 LLTNRAILEAMEGEKMVHVIDLDASEPAQWLALIQAFNSRPDGPPHLRITGVHH----QKEVLDQVAHRLIEEAEKLDIPFQFNP-VVSSLECLN 240
******************************************************....9**************************.799****** PP
GRAS 191 leeLrvkpgEalaVnlvlqlhrll................desvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
+e+Lrvk+gEalaV++vlqlh++l ++s++l++ ++d++L+++++lsPk++vv+eq++dhn+++ +er+le+l++y+al
XP_013621804.1 241 VEQLRVKTGEALAVSSVLQLHNFLasdvtnnnghslsgdsASSLPLSNsgKIDSFLNAIWGLSPKIIVVTEQDSDHNGSTVMERLLESLYTYAAL 335
**************************************9966666665569999***************************************** PP
GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
fd+le+k+pr+s++r+kvE++l+g+ei+n++aceg+errerhe+lekW++r++ aGF++vpls++a+ qa++ll+ +++dgyr++eesg++v++W
XP_013621804.1 336 FDCLETKVPRTSQDRMKVEKMLFGEEIKNIIACEGSERRERHEKLEKWSQRIDLAGFGNVPLSYYAMLQARRLLQGYGFDGYRIKEESGCAVICW 430
*********************************************************************************************** PP
GRAS 363 kdrpLvsvSaWr 374
+drpL+svSaWr
XP_013621804.1 431 QDRPLYSVSAWR 442
***********8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 445 aa
Download sequence Send
to blast |
MVVMFQEDNG TSSVASSPLQ VFSTMSLARP TLLPSPSSSP FHSLKDLKPE ERGLYLIHLL 60 LTCANHVASG SLQNANAALE QLSLLSSPGG DTMQRVAAYF TEALANRILK SWPGLYKALN 120 ATQTRTSNVS EEVHVRRLFF DMFPILKVSY LLTNRAILEA MEGEKMVHVI DLDASEPAQW 180 LALIQAFNSR PDGPPHLRIT GVHHQKEVLD QVAHRLIEEA EKLDIPFQFN PVVSSLECLN 240 VEQLRVKTGE ALAVSSVLQL HNFLASDVTN NNGHSLSGDS ASSLPLSNSG KIDSFLNAIW 300 GLSPKIIVVT EQDSDHNGST VMERLLESLY TYAALFDCLE TKVPRTSQDR MKVEKMLFGE 360 EIKNIIACEG SERRERHEKL EKWSQRIDLA GFGNVPLSYY AMLQARRLLQ GYGFDGYRIK 420 EESGCAVICW QDRPLYSVSA WRCKK
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC189301 | 0.0 | AC189301.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB030D08, complete sequence. |