PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013621548.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 306aa MW: 33627.2 Da PI: 5.8528

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013621548.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.2	3.5e-14	44	93	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f+ Lrel+P++ +K + a+ L +++ Y+++Lq XP_013621548.1 44 RSKHSLTEQRRRSKINERFQVLRELIPNS----EQKRDTASFLLEVIGYVQYLQ 93 889***********************8....79****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.41E-18	40	113	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.802	42	92	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.7E-21	42	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.92E-13	44	97	No hit	No description
Pfam	PF00010	1.1E-11	44	93	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.9E-11	48	98	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MRTGKGNQEE EDYGGEEDLG SKREGSSSAS RADAKDNDKA SAVRSKHSLT EQRRRSKINE 60 RFQVLRELIP NSEQKRDTAS FLLEVIGYVQ YLQEKVQKYE GSYPGWSQEP TKLTPWRNNH 120 WRVQSLASHP VAVNNVSAPV IPFPGKFEEI TVASAPATVA ELQNPVECDK GRAIASKSID 180 SQAELDDKGL PPLQPIHPLA HSEQVNNECP ATSDGQGPSD DLVIESGTIS ISTVYSHELL 240 SSLTQALQNA GIDLSHAKLS VQIDLGKRAN PSNKNLLTSD IEGATRSRNP GVEEDSEHSH 300 KRMRTL

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013621548.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352689	0.0	AK352689.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-03-H22.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013621548.1	0.0	PREDICTED: transcription factor BIM2-like isoform X1
Swissprot	Q9CAA4	1e-160	BIM2_ARATH; Transcription factor BIM2
TrEMBL	A0A3P6D5P5	0.0	A0A3P6D5P5_BRAOL; Uncharacterized protein
STRING	Bo2g062560.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5987	27	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	1e-154	BES1-interacting Myc-like protein 2

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]