PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013621349.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 271aa    MW: 31034.6 Da    PI: 8.9111
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013621349.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.44.4e-12311111297
                     HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     ++++ ++p +f+++  g    +  l++  ++g+sW+v l   + +++ ++ ++ W+eFv++n L+ +D+++F++++++ +   v+++
  XP_013621349.1  31 SKSMRIIPEEFVRSAHGA--FEHRLVFSVSWGNSWQVWL--HRDKNGlFMEEEDWNEFVDDNLLCPNDILLFTHVDTMFT--EVRIY 111
                     456789******999655..3446***************..66666659999*********************9987666..55555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.7E-1316113IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-1416113IPR015300DNA-binding pseudobarrel domain
CDDcd100176.84E-1117112No hitNo description
SMARTSM010192.5E-1219114IPR003340B3 DNA binding domain
PROSITE profilePS5086310.820114IPR003340B3 DNA binding domain
PfamPF023621.5E-931109IPR003340B3 DNA binding domain
SuperFamilySSF1019361.45E-6171258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.5E-5172262IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.019178270IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MALNGVFDFL QENVKKPRFC KSLPLGENWK SKSMRIIPEE FVRSAHGAFE HRLVFSVSWG  60
NSWQVWLHRD KNGLFMEEED WNEFVDDNLL CPNDILLFTH VDTMFTEVRI YKKDLPFFKQ  120
VISAPQVLNP KPKAPSSAPP GFAPFASSAS ASASRARQSS SPVQNPEQYL VNPQNPYFVK  180
TLSKKIDVLY VNQEVIQRYG LKFGPHLSLV HYLLPGEKHE AVIKIYRNAP CFNRWAAICK  240
KYNKKEGDSV VCELERSSGV VTAVRVHFVD E
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013621349.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895201e-124AC189520.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB091J13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013621349.10.0PREDICTED: B3 domain-containing protein At5g25470-like
RefseqXP_013675348.10.0B3 domain-containing protein At5g25470-like
SwissprotQ680D91e-98Y5475_ARATH; B3 domain-containing protein At5g25475
TrEMBLA0A0D3AXN00.0A0A0D3AXN0_BRAOL; Uncharacterized protein
STRINGBo2g158640.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44911645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25470.23e-93B3 family protein