PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013621084.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 1155aa    MW: 131039 Da    PI: 7.6482
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013621084.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00048570588523
                     TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                     +C+k Fsr+s L  H ++H
  XP_013621084.1 570 YCKKGFSRQSKLIFHRMSH 588
                     9***************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513757.454127161IPR002885Pentatricopeptide repeat
PfamPF015351.3131158IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.374163197IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.763295329IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.38330364IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007564.0E-4333365IPR002885Pentatricopeptide repeat
PfamPF015350.022333362IPR002885Pentatricopeptide repeat
PfamPF130411.1E-7364413IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.944365399IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.0011367396IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.144400434IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.4E-4403426IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.399488522IPR002885Pentatricopeptide repeat
PfamPF015350.12492519IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.158559589IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.328595629IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.0013598630IPR002885Pentatricopeptide repeat
PfamPF015350.15598620IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.325630660IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.106.9E-5631657IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS5137510.315700734IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.4E-6703735IPR002885Pentatricopeptide repeat
PfamPF015350.0012703730IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.908735769IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.407770804IPR002885Pentatricopeptide repeat
PfamPF015350.043773802IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.106.9E-58251040IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513758.879834868IPR002885Pentatricopeptide repeat
PfamPF130416.7E-8835880IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.1E-4837870IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.238869903IPR002885Pentatricopeptide repeat
SuperFamilySSF819011.23E-58761046No hitNo description
PfamPF128541.6E-5900932IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.536904938IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.5E-4910937IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.1069741008IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.65410091045IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.8110461080IPR002885Pentatricopeptide repeat
PfamPF015350.04810481077IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.002410491081IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.58810811115IPR002885Pentatricopeptide repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1155 aa     Download sequence    Send to blast
MLNLLSSRYS TRLKASLLSR RYSFASSSPR KHESSSSLSG GILDRFSWSL GGAAKASSSP  60
LKDLLLDLSD AVPDITRRFR RFLALKPKHV LELLLGFESE LQRGVKIQPL WNIFIWASKQ  120
HKGFKHHPQA YEIMASFLIR EGMVKEVELL LVEMEKDGET LDNEVIFCDL IQKYVDGFDS  180
RKAVMLFDWM RGKGLVPLTS CYETLIDHLV SVCKTESAYR VCLDWVEAKD ESFDRFDKVI  240
ELLCLDQRVQ EARVLARKLS SPTSSIYSKI CLGYNEKQDF EDLLSFIGEV KYQPDVFVGN  300
RIVHSLCMRF GSERAYVYTE ELQRLGFKPD EATYGILIGW CCHEGDIKRA FLYLSEIASK  360
GLKPGVYSYN AILSGLFRKG LWEHTGCILE EMKENEMLLG LSTCKIMVAG YCKARRFEEA  420
KKIVKEASKV EDPLTEVGFD PLAVRLKRDN GNGLSKAEFF DELGNGLYLD TDLDAYGEKV  480
NMVLDRSVLP EFNLLIVDAC SDGDLHRALS LLDEMPRWGQ KLSRRGFTVL IKSLCVSRSH  540
VRVSVSLMRK WPKLANQLDG ETLNFLVQEY CKKGFSRQSK LIFHRMSHQT HLHIDNATYT  600
SLISCFCKKE SLKDLLNVLD AAKKADWLPD LETCGALWEC LLHKGLVKEA VKLFERVFIS  660
YPLSKSEACR VFVEKLTVLK FSRVAYSVVE RLEGEGYVVE EEVYNLLIKG LCKDRNDSAA  720
FAVLEKMLEK KHVPSLLDSY ALIEGLCLAG KMSDAEDQLR TRLSNGVCLD NDIYNLMFGG  780
YCKGNNLRRV EEVLGIIVRK NVIVSVKSYR EYVRRMCSER KFISLLLGKS NPDGVIIYNL  840
LIFYLFKAKN HTEVEKVLLE MQGRGLFPDE TTFNFLVYGY YSCGDYSNSL RYLSAMISEG  900
MKPNKRSLRV VISSLCDSGD VKKAIDLWEV MESKGWSFGS SVVQTKIAEL LISRGDVAKA  960
EEFLTCATRN GCMMAPCYDN LIKKLSGLGS LGVAVHLLNI MLKNREVPDS SSYDSVINGL  1020
LRCSSNMLDE ARDFHTEMLE LGLSPSVSTW SVLVHKYCEA CQVLESERLI KSMVELGETP  1080
SPEMFRIVID RFRVENNTVK ASEMVEMMQK CGYEVDFETH WSLISNMSSS KEKKTAAGQG  1140
FLSRLLSGNG FAWKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5i9f_A6e-4012111451440pentatricopeptide repeat protein dPPR-U10
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013621084.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013621084.10.0PREDICTED: pentatricopeptide repeat-containing protein At5g15280
RefseqXP_013663573.10.0pentatricopeptide repeat-containing protein At5g15280, mitochondrial
SwissprotQ9LXF40.0PP384_ARATH; Pentatricopeptide repeat-containing protein At5g15280, mitochondrial
TrEMBLA0A0D3AJ680.0A0A0D3AJ68_BRAOL; Uncharacterized protein
STRINGBo2g012510.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1096933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64100.22e-24pentatricopeptide (PPR) repeat-containing protein
Publications ? help Back to Top
  1. Lurin C, et al.
    Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis.
    Plant Cell, 2004. 16(8): p. 2089-103
    [PMID:15269332]
  2. Carrie C,Venne AS,Zahedi RP,Soll J
    Identification of cleavage sites and substrate proteins for two mitochondrial intermediate peptidases in Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(9): p. 2691-708
    [PMID:25732537]