PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013620960.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-YA
Protein Properties Length: 298aa    MW: 33055.6 Da    PI: 10.4306
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013620960.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA958.5e-30209264158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQy++Il+RR++Rak+e e+k+   +rkpylheSRhkhA+rR+R+sgGrF
  XP_013620960.1 209 QEPVYVNAKQYEGILRRRKARAKAELESKV--INRKPYLHESRHKHAMRRARASGGRF 264
                     69****************************..89***********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.6E-32207267IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115233.977208267IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.9E-26210264IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.3E-23211233IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860213233IPR018362CCAAT-binding factor, conserved site
PRINTSPR006165.3E-23241264IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MMTSPRRKIT DLRALASSKG CHVSKKKKKL RVIFLPNPIR LLLRVSVTVC RLSGVPKSLH  60
LHQILLWLLN LQHKTIIAKL LLHHLRDATH DDVSRPLVEE RPSGSESNDV HSPSEDGGKD  120
SQAATSPPPP VSVDNHGVEG NDQTASMDDQ QVVQPPELVG HYIACVPNPY QDAYYGGMMG  180
AYGHHQPLGF RPYLGMARER TALPLDTTQE PVYVNAKQYE GILRRRKARA KAELESKVIN  240
RKPYLHESRH KHAMRRARAS GGRFAKKSEA EAAAARRGRG RSSATNSSGS EQPVETDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A6e-16209272266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1527RRKITDLRALASSKGCHVSKKKK
2248257RHKHAMRRAR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013620960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3172991e-119AK317299.1 Arabidopsis thaliana AT5G12840 mRNA, complete cds, clone: RAFL21-66-A21.
GenBankBT0258011e-119BT025801.1 Arabidopsis thaliana At5g12840 mRNA, complete cds.
GenBankY137201e-119Y13720.1 Arabidopsis thaliana mRNA for Hap2a transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013620960.10.0PREDICTED: nuclear transcription factor Y subunit A-1-like
SwissprotQ9LXV51e-100NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBLA0A0D3AIR21e-154A0A0D3AIR2_BRAOL; Uncharacterized protein
STRINGBo2g010950.11e-155(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59462646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.35e-73nuclear factor Y, subunit A1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Siriwardana CL, et al.
    NUCLEAR FACTOR Y, Subunit A (NF-YA) Proteins Positively Regulate Flowering and Act Through FLOWERING LOCUS T.
    PLoS Genet., 2016. 12(12): p. e1006496
    [PMID:27977687]
  3. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]