PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013620870.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 264aa    MW: 30258.3 Da    PI: 7.401
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013620870.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.38.7e-5171311128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lp+GfrFhPtdeelv++yL+++++++++++  vi+e+d+yk++Pw+Lp ++  +ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk++ + 
  XP_013620870.1   7 LPAGFRFHPTDEELVKFYLCRRCASEPITV-PVIAEIDLYKFNPWELPDMALYGEKEWYFFSHRDRKYPNGSRPNRAAGTGYWKATGADKPIGK- 99 
                     799**************************9.89***************6666689*************************************98. PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++ g+kk Lvfy g+ap+g+kt+W+mheyrl
  XP_013620870.1 100 -PKTLGIKKALVFYAGKAPRGVKTNWIMHEYRL 131
                     .778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.22E-603159IPR003441NAC domain
PROSITE profilePS5100559.0097159IPR003441NAC domain
PfamPF023652.6E-268131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001666Biological Processresponse to hypoxia
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009507Cellular Componentchloroplast
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MKAELNLPAG FRFHPTDEEL VKFYLCRRCA SEPITVPVIA EIDLYKFNPW ELPDMALYGE  60
KEWYFFSHRD RKYPNGSRPN RAAGTGYWKA TGADKPIGKP KTLGIKKALV FYAGKAPRGV  120
KTNWIMHEYR LANVDRSASS NRMNNLRLDD WVLCRIYNKK GTVEKYYPAD EKERVMMVIT  180
NTTTTSDSKC SSHVISPDVT CSSEVQSESK WVDLEDAFDA SMFGSLLQND AFVPQFPYQS  240
DFAAMFEDPL EQKPFFNWSF GSQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-83216510174Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bol.120680.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in root cortex, root caps and sepals. Not detected in imbibed seeds. {ECO:0000269|PubMed:19176720}.
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in regulation of seed germination under flooding. {ECO:0000269|PubMed:19176720}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013620870.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By low-oxygen stress. {ECO:0000269|PubMed:19176720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9747660.0KF974766.1 Brassica napus NAC transcription factor 102-1 (NAC102-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013620870.10.0PREDICTED: NAC domain-containing protein 102-like
SwissprotQ8H1151e-161NA102_ARATH; NAC domain-containing protein 102
TrEMBLA0A078HQC50.0A0A078HQC5_BRANA; BnaC02g42720D protein
TrEMBLA0A0D3AYK80.0A0A0D3AYK8_BRAOL; Uncharacterized protein
STRINGBo2g165880.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19028276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63790.11e-163NAC domain containing protein 102
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Takasaki H, et al.
    SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence.
    Plant J., 2015. 84(6): p. 1114-23
    [PMID:26518251]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  4. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]