PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013620826.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CAMTA
Protein Properties Length: 1013aa    MW: 113256 Da    PI: 5.4977
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013620826.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1170.72.2e-53111262116
            CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                     ++e ++rwlk+ e++ iL+n+e+++l+++++++p+sgsl L+nr+++++frkDG++w++kkdg+++ E+he+LKvg+ve+l+cyY+h+e++ptfq
  XP_013620826.1  11 YQEaHTRWLKPPEVHFILQNHERYQLAHTPPQNPTSGSLYLFNRRVLKFFRKDGHQWRRKKDGRAIAEAHERLKVGNVEALSCYYVHGEHDPTFQ 105
                     566699***************************************************************************************** PP

            CG-1  96 rrcywlLeeelekivlvhyle 116
                     rr+yw+L+ e+++ivlvhy++
  XP_013620826.1 106 RRIYWMLDPEYDHIVLVHYRD 126
                     *******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143775.1877133IPR005559CG-1 DNA-binding domain
SMARTSM010763.0E-7610128IPR005559CG-1 DNA-binding domain
PfamPF038591.8E-4613126IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.4E-9456544IPR013783Immunoglobulin-like fold
PfamPF018332.2E-8457540IPR002909IPT domain
CDDcd001029.06E-7457542No hitNo description
SuperFamilySSF812962.1E-17457541IPR014756Immunoglobulin E-set
Gene3DG3DSA:1.25.40.201.0E-14643739IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.159644736IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484035.29E-15646739IPR020683Ankyrin repeat-containing domain
CDDcd002047.22E-13664736No hitNo description
PfamPF127964.5E-7669737IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0075677706IPR002110Ankyrin repeat
PROSITE profilePS500889.538677709IPR002110Ankyrin repeat
SMARTSM0001514790812IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.638792819IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.66E-6792898IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.97846868IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.407847876IPR000048IQ motif, EF-hand binding site
PfamPF006120.0078849867IPR000048IQ motif, EF-hand binding site
SMARTSM000156.3E-4869891IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.267870894IPR000048IQ motif, EF-hand binding site
PfamPF006126.6E-5872891IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1013 aa     Download sequence    Send to blast
MQSEYEISTL YQEAHTRWLK PPEVHFILQN HERYQLAHTP PQNPTSGSLY LFNRRVLKFF  60
RKDGHQWRRK KDGRAIAEAH ERLKVGNVEA LSCYYVHGEH DPTFQRRIYW MLDPEYDHIV  120
LVHYRDISDG KEGRQSSGTV LQFSQNASTL FSSPSSIGTQ NARYNHYIGD STDLLQQHSS  180
TSPEVNSEAV FNSNGVETPQ GSGSSYEFEN RQAIKRLEEQ LSLGDDIVST VDPLYAQNES  240
LDSLQFLAQP GTVYQRPENN KLERCYGGYV GAQYNVDPLY SQNESLDSLL SLDCTEDINH  300
HAQPASGHQR PENNRLERSY GGYIGADYHP NNLTLAKNDT GGNGGSGDQE SESWKDVLEA  360
CEASVALNSE GSTPSSVKGL LPGMQEDSNW SYSNQADQGT LLLPQELGSF EHPGCYPELG  420
APENNAEYSR VMDDEGINRM PLQQEMRPAV SHKQEFTIQD VSPEWGYANE TTKVIIIGSF  480
LCDPTESTWS CMFGSVEVPF EIIKEGVIRC EAPPCGPGKV NLRITSGDGL SCSQIKEFEY  540
RDKPDTSCSR CSRDELFLLV RFVQTLLSDK KSNIEPGSDK LKKIKADDDD EEWSHIIDTI  600
LDDTATPSST VDWLLQKLLK DKLDAWLSSR SQDEDQTSCS LSKQEQGIIH MVAGLGFDWA  660
LHPILSLGVS VDFRDSNGWS ALHWAARYGR EKMVAALIAS RASAGAVTDP NAQDPAGKTA  720
ASIAAANGHK GLAGYLSEVA LTNHLSSLTL EETEHSLGSA QMQAEMIVNS ISGRSPPGND  780
DPHSRAALRN VAQAAARIQA AFRAHSFRKR QEREAAMAAC YQEYGIYADI EGIAAMSKLA  840
FGNVKNYNSA ALSIQKKYRG YKGRKEFLAK RQKVVKIQAY VRGYQVRKHY KVICWAVGIL  900
DKVVLRWRRK GVGLKGFRQD VESREEESED EDILKVFRKE KVDGAVNEAF SRVLSMTNSP  960
DARQQYQRVL KRYCQTKAEL GKTETLGTYG GDEDDNVLLD IADMQYENLR TLP
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:12218065}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013620826.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892000.0AC189200.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB005J17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013620826.10.0PREDICTED: calmodulin-binding transcription activator 4-like
RefseqXP_013671039.10.0calmodulin-binding transcription activator 4-like
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A078IP550.0A0A078IP55_BRANA; BnaC02g45620D protein
STRINGBo2g055720.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64762642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]