PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013620573.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 479aa    MW: 54565.8 Da    PI: 8.0559
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013620573.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.14.7e-1121881596
                    -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3 15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                    +l+l  +f+++h ++      l + d s + Wevkl  ++++    l++GW+eF+  n+  +g ++vF+++g++ f  +v v
  XP_013620573.1 21 LLTLDDEFLRNHTKV------LLISDASDKIWEVKL--DGNR----LAGGWEEFAAVNNFSDGNVLVFRHNGDEIF--HVAV 88
                    678889999888755......88899**********..9999....***********************9998888..6655 PP
2B372.17.1e-23139236199
                     EEEE-..-HHHHTT-EE--HHH...HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
              B3   1 ffkvltpsdvlksgrlvlpkkf..aeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                     f+ + ++ ++l ++rl l+++f  ++ ++++k  + ++ l +e+gr+W+++l+ + +sg++++t+GW++F++angL  gDf+ Fkl++ s++++v
  XP_013620573.1 139 FLRARVTRYNLIKDRLDLSRDFkfLSFNKHNK--PCEIYLANEKGRKWTLRLSRNISSGAFYITRGWSNFCSANGLIRGDFCYFKLSK-SGERPV 230
                     566678899999999*9999884355556665..558****************9*******************************987.888899 PP

                     EEEE-S CS
              B3  94 vkvfrk 99 
                     + ++++
  XP_013620573.1 231 LLLCSH 236
                     999987 PP
3B364.12.1e-20276368598
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                       +++ +k+g+l+++ +f+ e g+   +s+++tl +++gr+W  +l++++ks++  ++++kGW+e++kang++++D+++++l+  ++ ++ +k++
  XP_013620573.1 276 KYTPSRFKTGQLYISPSFLLESGIR--KSREITLLNKDGRKWPSYLQMTGKSRSewFYMRKGWREMCKANGVEVNDSFMLELIC-EDVTPIFKFH 367
                     568999*************999988..6779***************9955555556**************************99.7777888887 PP

                     - CS
              B3  98 r 98 
                     +
  XP_013620573.1 368 S 368
                     6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.616192IPR003340B3 DNA binding domain
SMARTSM010191.7E-91092IPR003340B3 DNA binding domain
CDDcd100174.46E-62888No hitNo description
SuperFamilySSF1019362.75E-102888IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.8E-103188IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.1E-20139237IPR003340B3 DNA binding domain
PROSITE profilePS5086315.763139236IPR003340B3 DNA binding domain
PfamPF023623.9E-19140236IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-17143235IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.04E-18144237IPR015300DNA-binding pseudobarrel domain
CDDcd100179.71E-17149235No hitNo description
Gene3DG3DSA:2.40.330.101.3E-16269368IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-17271370IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.0E-21272370IPR003340B3 DNA binding domain
PROSITE profilePS5086312.167272369IPR003340B3 DNA binding domain
PfamPF023621.4E-20274369IPR003340B3 DNA binding domain
CDDcd100172.79E-13283368No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MVIPPKPSLF HLKFLTGEKP LLTLDDEFLR NHTKVLLISD ASDKIWEVKL DGNRLAGGWE  60
EFAAVNNFSD GNVLVFRHNG DEIFHVAVSS DIQHASPSFT DTDDTEVDDE ADGEDEDTDD  120
DAWDVLVRKN KKPEADSCFL RARVTRYNLI KDRLDLSRDF KFLSFNKHNK PCEIYLANEK  180
GRKWTLRLSR NISSGAFYIT RGWSNFCSAN GLIRGDFCYF KLSKSGERPV LLLCSHESGN  240
GLEDKEEKRP EADPVKVCSV GGCTKEKNTP RILTLKYTPS RFKTGQLYIS PSFLLESGIR  300
KSREITLLNK DGRKWPSYLQ MTGKSRSEWF YMRKGWREMC KANGVEVNDS FMLELICEDV  360
TPIFKFHSKI ENKGACESVE KTQGVEIDGQ RGSKRGHTRV SNRSNTNSRK FQRTLPESCS  420
VSDLVANVKQ RIQDTLNTLR HFRAEIETKE KNLEASLLQV DALGERILGI SKILNSNLV
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Specifically expressed in the reproductive meristem. {ECO:0000269|PubMed:10092172}.
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in flower development. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00602PBMTransfer from AT4G31610Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013620573.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0517720.0AF051772.1 Brassica oleracea var. botrytis reproductive meristem gene 1 (REM1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013620573.10.0PREDICTED: B3 domain-containing protein REM1-like
SwissprotO650980.0REM1_BRAOB; B3 domain-containing protein REM1
TrEMBLA0A0D3A2T70.0A0A0D3A2T7_BRAOL; Uncharacterized protein
STRINGBo1g011120.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99501736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31610.11e-171B3 family protein
Publications ? help Back to Top
  1. Franco-Zorrilla JM, et al.
    Identification of genes specifically expressed in cauliflower reproductive meristems. Molecular characterization of BoREM1.
    Plant Mol. Biol., 1999. 39(3): p. 427-36
    [PMID:10092172]