PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB

Protein Properties

Length: 381aa MW: 41856.8 Da PI: 8.0153

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013620259.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.4	1e-15	43	87	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g W+ eEd l ++v+++G+++W++ ar ++ gR++k+c++rw + XP_013620259.1 43 KGTWSREEDVMLSELVEKFGPRNWSSMARSIP-GRSGKSCRLRWGN 87 799***************************.*********55 PP
2	Myb_DNA-binding	51.3	2.7e-16	95	137	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r+++T+ Ede ++ a++ +G++ W+ Ia+ ++ gRt++ +k++w+ XP_013620259.1 95 RNPFTEVEDEAIITAHAIHGNK-WSIIAKLLP-GRTDNAIKNHWN 137 789*****************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.697	38	89	IPR017930	Myb domain
SuperFamily	SSF46689	1.8E-29	41	136	IPR009057	Homeodomain-like
SMART	SM00717	2.6E-14	42	91	IPR001005	SANT/Myb domain
Pfam	PF00249	5.6E-15	43	87	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-22	44	96	IPR009057	Homeodomain-like
CDD	cd00167	5.03E-13	45	87	No hit	No description
PROSITE profile	PS51294	25.787	90	144	IPR017930	Myb domain
SMART	SM00717	4.2E-16	94	142	IPR001005	SANT/Myb domain
Pfam	PF00249	4.1E-14	95	137	IPR001005	SANT/Myb domain
CDD	cd00167	6.84E-12	97	140	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.2E-22	97	143	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009751	Biological Process	response to salicylic acid
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
MEGEMWRRSG IGEMAVAGGR RDDGVAMFVG EGTSGRRRKK RIKGTWSREE DVMLSELVEK 60 FGPRNWSSMA RSIPGRSGKS CRLRWGNQLD PSLKRNPFTE VEDEAIITAH AIHGNKWSII 120 AKLLPGRTDN AIKNHWNATL RRRCTDFETP TTNTPTGNLL LQDSRLDRTM NTFASSEETL 180 SSGGGGGGGG HVTTPIVSSD GKEATSMNIS EEQPSDKANE EDISRQVCND PPTLFRPVAK 240 LSSFNPYNHM EGSSTPHTLN QNKFQSCKQD TAMLRLVEGA YSERFVPQKC GSGCCSVSQK 300 DSLLGPEFVD YLDPPTFPSY ELAAIATDIS SLAWLRSGLE SSSVRAMEEA AGRLRPQGTR 360 GHRDHCLVSE QGKSRTNVLS T

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

MEGEMWRRSG IGEMAVAGGR RDDGVAMFVG EGTSGRRRKK RIKGTWSREE DVMLSELVEK  60
FGPRNWSSMA RSIPGRSGKS CRLRWGNQLD PSLKRNPFTE VEDEAIITAH AIHGNKWSII  120
AKLLPGRTDN AIKNHWNATL RRRCTDFETP TTNTPTGNLL LQDSRLDRTM NTFASSEETL  180
SSGGGGGGGG HVTTPIVSSD GKEATSMNIS EEQPSDKANE EDISRQVCND PPTLFRPVAK  240
LSSFNPYNHM EGSSTPHTLN QNKFQSCKQD TAMLRLVEGA YSERFVPQKC GSGCCSVSQK  300
DSLLGPEFVD YLDPPTFPSY ELAAIATDIS SLAWLRSGLE SSSVRAMEEA AGRLRPQGTR  360
GHRDHCLVSE QGKSRTNVLS T

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h88_C	4e-36	42	144	57	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	4e-36	42	144	57	159	MYB PROTO-ONCOGENE PROTEIN
1mse_C	3e-36	42	143	3	104	C-Myb DNA-Binding Domain
1msf_C	3e-36	42	143	3	104	C-Myb DNA-Binding Domain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	35	40	RRRKKR

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00337	DAP	Transfer from AT3G09230	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013620259.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by salicylic acid. {ECO:0000269\|PubMed:16463103}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF974750	0.0	KF974750.1 Brassica napus MYB transcription factor 1 (MYB1.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013620259.1	0.0	PREDICTED: myb-related protein 330-like
Swissprot	Q42575	1e-178	MYB1_ARATH; Transcription factor MYB1
TrEMBL	A0A0D3AEY5	0.0	A0A0D3AEY5_BRAOL; Uncharacterized protein
STRING	Bo1g144680.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8492	26	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09230.1	1e-173	myb domain protein 1

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590] Verma N,Burma PK Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum. Plant J., 2017. 92(3): p. 481-494 [PMID:28849604]