PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013620052.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 424aa MW: 48262.2 Da PI: 9.4273 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.2 | 1.6e-17 | 105 | 151 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +l+++v+qlG + W+ I++++ gR +kqc++rw+++l XP_013620052.1 105 KGQWTAEEDRKLIRLVRQLGERKWAMISQKLE-GRAGKQCRERWHNHL 151 799*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 53.3 | 6.3e-17 | 158 | 199 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + W++eE+ lv+a+k+ G++ W+ Ia+ ++ gRt++++k++w+ XP_013620052.1 158 DGWSEEEERVLVEAHKRIGNK-WAEIAKLIP-GRTENSIKNHWN 199 56*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 28.568 | 100 | 155 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.05E-29 | 102 | 198 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-15 | 104 | 153 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-26 | 106 | 159 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.59E-14 | 108 | 151 | No hit | No description |
Pfam | PF13921 | 5.3E-18 | 108 | 166 | No hit | No description |
SMART | SM00717 | 6.4E-15 | 156 | 204 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.969 | 156 | 206 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-20 | 160 | 204 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.76E-11 | 160 | 202 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 424 aa Download sequence Send to blast |
MEHRRLVHGA APPLTAVERF LYGQKNDTLC PKKQDCSRDR HPPIMKKTKA IETKNDNKEN 60 HTCGPRKDKY LVANGRISIG DMVVKDATRD YQNPTKKRPC KNIIKGQWTA EEDRKLIRLV 120 RQLGERKWAM ISQKLEGRAG KQCRERWHNH LRPDIKKDGW SEEEERVLVE AHKRIGNKWA 180 EIAKLIPGRT ENSIKNHWNA TKRRQNSKRK QKRRQENADN YDSDLPPAAK RPCILQDYIK 240 SVYNNVENKA SDDNKNEISI SVLSTPNLDQ TYSDGDSTSS VLGDPYDEEL VYLQNIFANH 300 PVSLDNIGLN QTSDEVNMIK NPSSHKSVWT HHQDQAMVAV PENKPHLASD IYLSYLLNGT 360 ASSSYSNPHF PSSSSSTSST TVEKGGYSEF LVPHANSTGE KREMDLMEML SGSIQGGNKC 420 FPLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 1e-44 | 103 | 205 | 2 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 1e-44 | 103 | 205 | 2 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 201 | 212 | KRRQNSKRKQKR |
2 | 207 | 214 | KRKQKRRQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: During female gametogenesis, expressed in the female gametophyte at stage FG4 (four-nucleate stage) in all four nuclei. Expressed in the central cell in unfused polar nuclei at stage FG5 and secondary nucleus at stage FG6. Not expressed in mature female gametophytes (stage FG7). {ECO:0000269|PubMed:24068955}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in ovary septum and stamen filament. {ECO:0000269|PubMed:24068955}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for female gametophyte fertility. Acts redundantly with MYB64 to initiate the FG5 transition during female gametophyte development. The FG5 transition represents the switch between free nuclear divisions and cellularization-differentiation in female gametophyte, and occurs during developmental stage FG5. {ECO:0000269|PubMed:24068955}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013620052.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013620052.1 | 0.0 | PREDICTED: transcription factor MYB48 | ||||
Swissprot | Q9FIM4 | 0.0 | MY119_ARATH; Transcription factor MYB119 | ||||
TrEMBL | A0A0D3AL55 | 0.0 | A0A0D3AL55_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g028290.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4265 | 26 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58850.1 | 0.0 | myb domain protein 119 |
Publications ? help Back to Top | |||
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