PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013620049.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 227aa MW: 25949 Da PI: 10.4882 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47.2 | 4e-15 | 128 | 215 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k +++s+v+ +l lp +f+++ ++k ++ +tl de+g+++e+ + k+ + l++GW +F+ +++L gD +vF+l++ + f +v XP_013620049.1 128 FVKSMLQSHVSGGFWLGLPVHFCRSE-LQK-QDGVITLIDEEGEEFEIVY--LAKRTG--LSGGWLGFAVSHNLVYGDALVFELVRPTVF--KVY 214 89*********************766.454.4458***************..555544..************************987777..555 PP E CS B3 96 v 96 + XP_013620049.1 215 I 215 4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.2E-18 | 122 | 217 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.26E-22 | 124 | 218 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.18E-22 | 126 | 217 | No hit | No description |
PROSITE profile | PS50863 | 12.21 | 128 | 219 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.1E-13 | 128 | 215 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.5E-20 | 128 | 219 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MVVAKQSPYE EFRLRRLEEN KKRMEALNLP NLCQTLRLTS VKTSPMKKSN LAREKQLVVV 60 RRSSRISNAS SSSPVYKEVV VQRVHLPRRV SKGRDLSNRV YVSEEIREEA FSKAEKLQAD 120 LRNRFPSFVK SMLQSHVSGG FWLGLPVHFC RSELQKQDGV ITLIDEEGEE FEIVYLAKRT 180 GLSGGWLGFA VSHNLVYGDA LVFELVRPTV FKVYITRVKS SGESLKM |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013620049.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013620049.1 | 1e-165 | PREDICTED: B3 domain-containing protein At5g42700 | ||||
Swissprot | Q9FMZ4 | 2e-99 | Y5270_ARATH; B3 domain-containing protein At5g42700 | ||||
TrEMBL | A0A0D3ATG3 | 1e-164 | A0A0D3ATG3_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g116250.1 | 1e-165 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3744 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 1e-101 | B3 family protein |
Publications ? help Back to Top | |||
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