PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013619663.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family AP2
Protein Properties Length: 574aa    MW: 63222.9 Da    PI: 6.3918
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013619663.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.51.9e-14212271155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  ++  g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  XP_013619663.1 212 SIYRGVTRHRWTGRYEAHLWDnSCKrEGqaRKgRQVYLGGYDREEKAARAYDLAALKYWG 271
                     57*******************999975578446*************************98 PP
2AP251.23.2e-16314365155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+++++ grW A+I  +     +k  +lg+fgt eeAa+a++ a+ k++g
  XP_013619663.1 314 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 365
                     57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.51E-17212281IPR016177DNA-binding domain
CDDcd000183.49E-21212281No hitNo description
PfamPF008475.3E-11212271IPR001471AP2/ERF domain
PROSITE profilePS5103219.151213279IPR001471AP2/ERF domain
SMARTSM003801.6E-28213285IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-15213280IPR001471AP2/ERF domain
PRINTSPR003674.6E-6214225IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-17314375IPR016177DNA-binding domain
CDDcd000181.30E-23314375No hitNo description
PfamPF008474.0E-11314365IPR001471AP2/ERF domain
SMARTSM003801.8E-32315379IPR001471AP2/ERF domain
PROSITE profilePS5103218.782315373IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-17315374IPR001471AP2/ERF domain
PRINTSPR003674.6E-6355375IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MKSMNNNWLG FSLSPYDQNI HRTGVVDSST ATTAVDVTGE YCYDMTAASA ESSAVQTSFP  60
SPFGVVLDAF TRDNNSHSRD WDINGGACNN IHSNDQNEPK LENFFGRTTT IYNNRENGGD  120
GNGGCGEGDG SGGSLGLSMI KTWLRNQPVS NVDHQDNNGN AARGLSLSMN SSTTCDSNNY  180
NNSNVVVQEK TNVDSVDATP KKTIESFGQR TSIYRGVTRH RWTGRYEAHL WDNSCKREGQ  240
ARKGRQVYLG GYDREEKAAR AYDLAALKYW GTTTTTNFPI SEYEKEVEDM NHMTRQEYVA  300
SLRRKSSGFS RGASIYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFGTQE EAAEAYDIAA  360
IKFRGLTAVT NFEMSRYNVK AILDSPSLPI GSSAKRLKEV NHLVPSMMIN NVSESENDAS  420
GWQNAAVQHH HGIDLSLLQQ HQERYNNYYH GVTARAYFKE EEDQHHFLSN SNSQSLMANI  480
DQHSSASGDM VTVYGNVDGY GSHQALAIPV GTSLNCDALA AAEIAYDARN HYYFAQQQQG  540
GGGFPVGISN NVGSNMYFNG EGGGEGAFTV WNNT
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in embryo throughout embryogenesis. Also present in free nuclear endosperm, but disappears once endosperm cellularization begins. {ECO:0000269|PubMed:12172019}.
UniprotTISSUE SPECIFICITY: Mostly expressed in developing seeds. {ECO:0000269|PubMed:12172019}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013619663.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3179040.0AF317904.1 Brassica napus AP2/EREBP transcription factor BABY BOOM1 (BBM1) mRNA, complete cds.
GenBankAF3179050.0AF317905.1 Brassica napus AP2/EREBP transcription factor BABY BOOM2 (BBM2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619663.10.0PREDICTED: AP2-like ethylene-responsive transcription factor BBM2
SwissprotQ8LSN20.0BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A0D3AJI70.0A0A0D3AJI7_BRAOL; Uncharacterized protein
STRINGBo2g013700.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86552737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.10.0AP2 family protein