PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013619400.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 376aa    MW: 42385.1 Da    PI: 7.2099
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013619400.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.94.1e-32195249155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r+rWt++LHe+Fve+v++LGG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR+
  XP_013619400.1 195 KTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRI 249
                     68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.48E-17194249IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-28194250IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-23195250IPR006447Myb domain, plants
PfamPF002491.4E-8199248IPR001005SANT/Myb domain
PfamPF143793.2E-20279326IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MDNINFETSN ASQGSRLHLH SQSQPPQLFN LQDVNMNHYN QSSPWTSETF SGYTPYDCTA  60
NQSLSVQCSS SKPNHALFHP YHHDQSSDHP SEDQSQSMVP MQLLQDQYLK PLYQKSCAND  120
FAATNASSSS YSLSFDASQD PQELCRRTYS TSNVTQLHFS SSHHHAKQTH PRFSSHSFSA  180
HGGSMAPNCG TVGNKTRIRW TQDLHEKFVE CVNRLGGADK ATPKAILKLM DSEGLTIFHV  240
KSHLQKYRIA KYIPDYQEGK FEKGSCSKEL SQLDTKTGVQ IKEALQLQLD VQRHLHEQLE  300
IQRNLQLRIE EQGKQLKIMI EQQQKTKECL LLKSPNAEAS LSLSASDHSP PPFSIQDAEA  360
LMLKTYGDTQ SQSKIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A8e-23195252259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B8e-23195252259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A8e-23195252259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C8e-23195252259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D8e-23195252259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F8e-23195252259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H8e-23195252259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J8e-23195252259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013619400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619399.10.0PREDICTED: transcription repressor KAN1-like
RefseqXP_013619400.10.0PREDICTED: transcription repressor KAN1-like
RefseqXP_013695760.10.0myb family transcription factor PHL5
SwissprotQ0WVU30.0PHL5_ARATH; Myb family transcription factor PHL5
TrEMBLA0A078FP180.0A0A078FP18_BRANA; BnaC02g01850D protein
TrEMBLA0A0D3AI070.0A0A0D3AI07_BRAOL; Uncharacterized protein
STRINGBo2g007410.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.11e-179G2-like family protein