PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013618976.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 369aa    MW: 40444.5 Da    PI: 7.1666
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013618976.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.66.1e-051942351055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     + RR++i +++  L +l+P +    +k   Ka +L + ++Y++sLq
  XP_013618976.1 194 KVRREKIGERMKLLEDLVPGC----NKVTGKALMLDEIINYVQSLQ 235
                     67******************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.82184234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.4E-4190240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.07E-12194248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-11194249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.65E-5194239No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MDNELFMNTE LQPPPELQPL MNPNLSQYSP PQDCFTWEKS TEQQQKQGIF DSALSSLVSS  60
PTPSNSNFSG CGGGDGFIIR ELIGKLSNSS ATPNRTTPLT EFSGDPGFAE RAARFSCFGS  120
RSFNGRTNST LPVNNSKIVN SGKLTRVAST PALNSLVSPM VPAGEFSRKR KSVSKGKSKE  180
IPLPTASPAP SFTKVRREKI GERMKLLEDL VPGCNKVTGK ALMLDEIINY VQSLQRQVEF  240
LSMKLSSVND TRLEFNVDAL VSKDVMIPTS SNRLHEAGLQ AESLSHHSYN NNSQLHTNVS  300
SCNMMLQSPV NSLETSTLAS SFTHLPTLTQ FTDSISQYQM FSQEDLQSIV GMGVAHNPNH  360
ESQNMKIEL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166171SRKRKS
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013618976.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4886101e-113AF488610.1 Arabidopsis thaliana clone bHLH078 putative bHLH transcription factor mRNA, complete cds.
GenBankBT0029451e-113BT002945.1 Arabidopsis thaliana clone RAFL14-96-A17 (R20245) unknown protein (At5g48560) mRNA, complete cds.
GenBankBT0056371e-113BT005637.1 Arabidopsis thaliana clone U20245 unknown protein (At5g48560) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013618976.10.0PREDICTED: transcription factor bHLH78-like isoform X2
SwissprotQ9SRT21e-111BH062_ARATH; Transcription factor bHLH62
TrEMBLA0A3N6SRV40.0A0A3N6SRV4_BRACR; Uncharacterized protein
STRINGBra020691.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48560.11e-104bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]