PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013618974.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 417aa    MW: 45899.5 Da    PI: 7.9384
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013618974.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.35.8e-08236283455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L +l+P +    +k   Ka +L + ++Y++sLq
  XP_013618974.1 236 SHSLAERVRREKIGERMKLLEDLVPGC----NKVTGKALMLDEIINYVQSLQ 283
                     8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.42E-8230287No hitNo description
SuperFamilySSF474599.29E-16230296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.9232282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-15232297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-5236283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-8238288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MDNELFMNTE LQPPPELQPL MNPNLSQYSP PQDCFTWEKS TEQQQKQGIF DSALSSLVSS  60
PTPSNSNFSG CGGGDGFIIR ELIGKLSNSS ATPNRTTPLT EFSGDPGFAE RAARFSCFGS  120
RSFNGRTNST LPVNNSKIVN SGKLTRVAST PALNSLVSPM VPAGEFSRKR KSVSKGKSKE  180
IPLPTASPAP SFTKTAEGKG GKRRRQDEEK EDNTKAPEPP KDYIHVRARR GQATDSHSLA  240
ERVRREKIGE RMKLLEDLVP GCNKVTGKAL MLDEIINYVQ SLQRQVEFLS MKLSSVNDTR  300
LEFNVDALVS KDVMIPTSSN RLHEAGLQAE SLSHHSYNNN SQLHTNVSSC NMMLQSPVNS  360
LETSTLASSF THLPTLTQFT DSISQYQMFS QEDLQSIVGM GVAHNPNHES QNMKIEL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166171SRKRKS
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA to G box 5'-CACGTG-3' and to E-box 5'-CANNTG-3' (By similarity). Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000250|UniProtKB:Q8GY61, ECO:0000269|PubMed:24130508}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013618974.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4886101e-144AF488610.1 Arabidopsis thaliana clone bHLH078 putative bHLH transcription factor mRNA, complete cds.
GenBankBT0029451e-144BT002945.1 Arabidopsis thaliana clone RAFL14-96-A17 (R20245) unknown protein (At5g48560) mRNA, complete cds.
GenBankBT0056371e-144BT005637.1 Arabidopsis thaliana clone U20245 unknown protein (At5g48560) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013618974.10.0PREDICTED: transcription factor bHLH78-like isoform X1
SwissprotQ9FJL40.0BH078_ARATH; Transcription factor bHLH78
TrEMBLA0A3N6SRV40.0A0A3N6SRV4_BRACR; Uncharacterized protein
STRINGBra020691.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23322775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48560.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]