 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
XP_013618688.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
Family |
Trihelix |
Protein Properties |
Length: 563aa MW: 63279.1 Da PI: 7.0417 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_013618688.1 | genome | NCBI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 94.6 | 9.6e-30 | 123 | 208 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
rW++qe+l+L+e+r++++++++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk++eg+ +r ++ +++++f+qlea
XP_013618688.1 123 RWPRQETLTLLEIRSRLDHKFKEANQKGPLWDEVSRIMsEEHGYQRSGKKCREKFENLYKYYKKTREGKAGR--QDGKHYRFFRQLEA 208
8*************************************999*****************************98..55667*******85 PP
|
2 | trihelix | 55.1 | 2e-17 | 399 | 477 | 1 | 79 |
trihelix 1 rWtkqevlaLiearremeerlrr...gklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekkrtsessstc 79
+W +qe+ +L+e+r++m++++++ g+++ lWeev+ km++ gf ++s+ Ckekwe++++ kk+++ +k++ ss+c
XP_013618688.1 399 CWNEQEITKLMEIRTSMDSAFQEilgGCSDDFLWEEVAGKMAQLGFdQKSALLCKEKWEWISNGKKKMNKKRKDN----SSSC 477
7*********************98889*******************778**************999988888875....3334 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009909 | Biological Process | regulation of flower development |
GO:0010200 | Biological Process | response to chitin |
GO:0046621 | Biological Process | negative regulation of organ growth |
GO:0048442 | Biological Process | sepal development |
GO:0048498 | Biological Process | establishment of petal orientation |
GO:0090428 | Biological Process | perianth development |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 563 aa
Download sequence Send
to blast |
MDDHHPQYGV PELRQLMQGG GRTTTTESPS TSSHFPSGFF GFNLAPAAPP PPPQHHRLHQ 60 FTTDQEMGFL PRGIHGLGGS SSTAGNNSNL NASSSGGAVG FSGFLDGGGI GGGGGGDGGG 120 TGRWPRQETL TLLEIRSRLD HKFKEANQKG PLWDEVSRIM SEEHGYQRSG KKCREKFENL 180 YKYYKKTREG KAGRQDGKHY RFFRQLEALY GDSNNLVPCP SHNTQFMSNA LHGFHTQNAM 240 NDVTTTTSNI HNVDSVHGFH RQSLSLSNNY NSSELELVTS SSEGNDSSSR RKKRSWKNKI 300 KEFIDVNMKR LMERQDVWLE KLTKVIEDKE EQRMMKEEEW RKSEAARIDK EHLFWSKERE 360 RMEARDVAVI EALQFLTGKT LIKPLCSSPE ERINGSGSCW NEQEITKLME IRTSMDSAFQ 420 EILGGCSDDF LWEEVAGKMA QLGFDQKSAL LCKEKWEWIS NGKKKMNKKR KDNSSSCGVY 480 YPTTEENTIY NNQESGYNDN DQRHQMNEQG NVGSSTSNVN AAAGNPSGAM AANTNCFPFF 540 MGDGDQNLWE SYGLRLNKGE NHE
|
Expression --
Description ? help
Back to Top |
Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: First observed in the early-developing flower, in four zones between the initiating sepals and in their developing margins. Later detected in the margins of expanding sepals, petals and stamens, and in the leaf margins. {ECO:0000269|PubMed:15269176}. |
Uniprot | TISSUE SPECIFICITY: Confined to flowers, at low levels. Also present in 7-days-old seedlings. Barely detectable in other tissues such as young seedlings, roots, stems, leaves and siliques (PubMed:15269176). Expressed in flower primordia, more precisely between newly arisen sepal primordia and also at the basal margins of developing sepals (PubMed:25697797). {ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:25697797}. |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}. |
Regulation -- Description ? help
Back to Top |
Source |
Description |
UniProt | INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}. |