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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013618542.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | LBD | ||||||||
Protein Properties | Length: 132aa MW: 14669.5 Da PI: 7.338 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 139.8 | 9e-44 | 12 | 110 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C++dCv+apyfp ++p kfanvh++FGasnv+k+l+++ +++red+++sl+yeAear++dPvyG+vg i+ lq+q+ +l+ el+ XP_013618542.1 12 PCAACKFLRRRCTSDCVFAPYFPPDEPTKFANVHRIFGASNVSKILHEVAPHQREDTVNSLAYEAEARLNDPVYGCVGAISVLQRQVLKLQRELE 106 7*********************************************************************************************9 PP DUF260 96 llke 99 ++++ XP_013618542.1 107 ETNA 110 9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.908 | 11 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.9E-43 | 12 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 132 aa Download sequence Send to blast |
MASSYSNYIN SPCAACKFLR RRCTSDCVFA PYFPPDEPTK FANVHRIFGA SNVSKILHEV 60 APHQREDTVN SLAYEAEARL NDPVYGCVGA ISVLQRQVLK LQRELEETNA DLMRYASSLG 120 GEMTSNYGGQ RG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-58 | 10 | 125 | 9 | 125 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-58 | 10 | 125 | 9 | 125 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013618542.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013618542.1 | 5e-96 | PREDICTED: LOB domain-containing protein 25-like | ||||
Refseq | XP_013618543.1 | 5e-96 | PREDICTED: LOB domain-containing protein 25-like | ||||
Refseq | XP_013675155.1 | 5e-96 | LOB domain-containing protein 25 | ||||
Swissprot | Q8L8Q3 | 8e-85 | LBD25_ARATH; LOB domain-containing protein 25 | ||||
TrEMBL | A0A0D3AW94 | 1e-94 | A0A0D3AW94_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3N6T541 | 1e-94 | A0A3N6T541_BRACR; Uncharacterized protein | ||||
TrEMBL | A0A3P6DS91 | 1e-94 | A0A3P6DS91_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g144870.1 | 2e-95 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM131 | 28 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 3e-87 | LOB domain-containing protein 25 |
Publications ? help Back to Top | |||
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