PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013618510.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 331aa    MW: 36876.4 Da    PI: 5.4676
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013618510.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.11e-15126177155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++Y+k+L+
  XP_013618510.1 126 QRMTHIAVERNRRKQMNDYLAVLRSLMPPS---YAQRGDQASIVAGAINYLKELE 177
                     79****************************...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.09E-13124181No hitNo description
Gene3DG3DSA:4.10.280.105.9E-14125181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-16125189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.304125176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-13126177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-10131182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MALEAVVYLQ DPLSYSSCKD FPFHDLYFQQ GEDQDPLDTK NNIKLGQEQR QGLPRINYNG  60
KSGDTFTNDD YNYNDQEEDL QWPRDDPLYG SALDQPPPSD VAAGGGRRKR RRRTKSSKNK  120
EEIENQRMTH IAVERNRRKQ MNDYLAVLRS LMPPSYAQRG DQASIVAGAI NYLKELEHHL  180
QSIEPPLKSA TVPVATGSAA AAADQINTIA ASSLGQFSEF FVFPQYSSRP SSSSVAEGMA  240
EIEVTMVESH ASVKILAKKR PKQLLKLAAS IQNLKLTVLH LNVTTCDDSV LYSISLKIGL  300
IQVEEGSQLN TVEDIAAGMN QILRRIEEES S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106112RRKRRRR
2107111RKRRR
3107113RKRRRRT
4126137RMTHIAVERNRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013618510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013618510.10.0PREDICTED: transcription factor bHLH96-like isoform X1
SwissprotQ9C7T41e-169BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0D3AQ110.0A0A0D3AQ11_BRAOL; Uncharacterized protein
STRINGBo2g075510.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-159bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]