PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013618278.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ZF-HD | ||||||||
Protein Properties | Length: 308aa MW: 35287.6 Da PI: 9.4299 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 99.3 | 2.8e-31 | 93 | 147 | 4 | 59 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +YkeClkNhAas+Ggha+DGCgEfmps geeg+++al+C+AC CHRnFHRre e XP_013618278.1 93 NKYKECLKNHAASTGGHAIDGCGEFMPS-GEEGSIEALTCSACHCHRNFHRREIEG 147 58*************************9.999*********************886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01566 | 7.8E-31 | 94 | 145 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 6.0E-29 | 94 | 145 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-23 | 94 | 155 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 28.051 | 95 | 144 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.01E-18 | 207 | 280 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.0E-29 | 213 | 281 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 6.5E-27 | 219 | 275 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MLAIKRKIKI MEVASQEEHD MPIPINTTHG GHGHMIHRHH DHRHHNPANS THPNPLIVLS 60 NGNGFRQNHD DPDHHNVGYN IMISNNKEKH VVNKYKECLK NHAASTGGHA IDGCGEFMPS 120 GEEGSIEALT CSACHCHRNF HRREIEGEDK TYFSPYHHNQ PQRNPMFHHH HKMTRSPLPQ 180 QMIMPLGVAT TTVSNSESEE DIPFQQPPPP YNHGGHNQKK RLRTKFTQEQ KEKMLSFAER 240 IGWKMQRQEE SVVQKFCQEI GVRRRVLKVW IHNNKHNLSK KSNNNNVEIS AGNNDINKAL 300 TGNRASSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 2e-23 | 219 | 277 | 17 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00258 | DAP | Transfer from AT2G02540 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013618278.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013618278.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 3 isoform X1 | ||||
Swissprot | O64722 | 1e-125 | ZHD3_ARATH; Zinc-finger homeodomain protein 3 | ||||
TrEMBL | A0A0D3AVI7 | 0.0 | A0A0D3AVI7_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g136360.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3339 | 26 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02540.1 | 1e-113 | homeobox protein 21 |
Publications ? help Back to Top | |||
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