PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013616668.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WRKY | ||||||||
Protein Properties | Length: 248aa MW: 26439.2 Da PI: 9.9906 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 103.8 | 9.4e-33 | 150 | 206 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 DgynWrKYGqK+vkgs+fprsYY+Ct + Cpvkkk+ers d++v++++Y+g+Hnhe XP_013616668.1 150 GDGYNWRKYGQKQVKGSDFPRSYYKCTNPACPVKKKIERSV-DGQVTKTIYKGQHNHE 206 5****************************************.***************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.4E-28 | 141 | 208 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.778 | 144 | 208 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.23E-25 | 147 | 208 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.9E-33 | 149 | 207 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.0E-24 | 151 | 206 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MASPAAAAVV ASAHQTPVSS VGGGGDSLLD PRSKQNRPTG LMITQPPGMF TVPPGLSPAT 60 LLDSPSFFGL FSPIQGSFGM THQQALAQVT AQGNTVQIQS GSSTQQQTSV TEVPSLPAPV 120 QDSLQAQRVD SAVSVYENRS QPQNADKPAG DGYNWRKYGQ KQVKGSDFPR SYYKCTNPAC 180 PVKKKIERSV DGQVTKTIYK GQHNHEPPQN NKRGGGNNNG SSESSDIANQ FKTSNNSLNK 240 SKRYQETS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-19 | 151 | 208 | 19 | 77 | Probable WRKY transcription factor 4 |
2ayd_A | 5e-19 | 151 | 208 | 16 | 74 | WRKY transcription factor 1 |
2lex_A | 5e-19 | 151 | 208 | 19 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013616668.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM593135 | 0.0 | KM593135.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY17) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013616663.1 | 0.0 | PREDICTED: probable WRKY transcription factor 3 | ||||
Refseq | XP_013616664.1 | 0.0 | PREDICTED: probable WRKY transcription factor 3 | ||||
Refseq | XP_013616665.1 | 0.0 | PREDICTED: probable WRKY transcription factor 3 | ||||
Refseq | XP_013616666.1 | 0.0 | PREDICTED: probable WRKY transcription factor 3 | ||||
Refseq | XP_013616667.1 | 0.0 | PREDICTED: probable WRKY transcription factor 3 | ||||
Refseq | XP_013616668.1 | 0.0 | PREDICTED: probable WRKY transcription factor 3 | ||||
Refseq | XP_013616669.1 | 0.0 | PREDICTED: probable WRKY transcription factor 3 | ||||
Swissprot | Q9ZQ70 | 1e-111 | WRKY3_ARATH; Probable WRKY transcription factor 3 | ||||
TrEMBL | A0A0D3AVS7 | 0.0 | A0A0D3AVS7_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g137260.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03340.1 | 2e-97 | WRKY DNA-binding protein 3 |
Publications ? help Back to Top | |||
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