PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013616284.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 247aa MW: 28056.6 Da PI: 9.686 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 165.4 | 2e-51 | 14 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeelvv+yLk+kv +++l++ ++i+++d+++++PwdLp + eke yfFs+r+ ky++g+r+nrat sgyWkatg dk+v+++ XP_013616284.1 14 LPPGFRFHPTDEELVVQYLKRKVLSSPLPA-SIIPDFDVCRADPWDLPGN---LEKERYFFSTREAKYPNGNRSNRATGSGYWKATGIDKRVVTS 104 79****************************.89***************44...4789********************************999988 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ vglkktLvfykg+ p+g++tdW+mheyrl XP_013616284.1 105 rGNQIVGLKKTLVFYKGKPPHGSRTDWIMHEYRL 138 57777***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.2E-60 | 10 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.756 | 14 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-27 | 15 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MDNVKLVKNG VMRLPPGFRF HPTDEELVVQ YLKRKVLSSP LPASIIPDFD VCRADPWDLP 60 GNLEKERYFF STREAKYPNG NRSNRATGSG YWKATGIDKR VVTSRGNQIV GLKKTLVFYK 120 GKPPHGSRTD WIMHEYRLSS SPPSSMGPTQ NWVLCRIFLK KRAGNSDEGD NRNLGYDNEH 180 IEITTTNKTE DKTKPIFFDF MRKERTTDLN LLPGSPTSDH ASSGLTTEIF SSDEETSSSC 240 NSFRRNL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-51 | 12 | 165 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-51 | 12 | 165 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-51 | 12 | 165 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-51 | 12 | 165 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-51 | 12 | 165 | 18 | 173 | NAC domain-containing protein 19 |
3swm_B | 7e-51 | 12 | 165 | 18 | 173 | NAC domain-containing protein 19 |
3swm_C | 7e-51 | 12 | 165 | 18 | 173 | NAC domain-containing protein 19 |
3swm_D | 7e-51 | 12 | 165 | 18 | 173 | NAC domain-containing protein 19 |
3swp_A | 7e-51 | 12 | 165 | 18 | 173 | NAC domain-containing protein 19 |
3swp_B | 7e-51 | 12 | 165 | 18 | 173 | NAC domain-containing protein 19 |
3swp_C | 7e-51 | 12 | 165 | 18 | 173 | NAC domain-containing protein 19 |
3swp_D | 7e-51 | 12 | 165 | 18 | 173 | NAC domain-containing protein 19 |
4dul_A | 6e-51 | 12 | 165 | 15 | 170 | NAC domain-containing protein 19 |
4dul_B | 6e-51 | 12 | 165 | 15 | 170 | NAC domain-containing protein 19 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bol.3787 | 0.0 | leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Up-regulated during xylem vessel element differentiation. {ECO:0000269|PubMed:20388856}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in xylem and phloem cells in roots and inflorescence stems (PubMed:20388856). Highly expressed in senescent leaves. Expressed in roots, and abscission and dehiscence tissues, such as axils of bracts and abscission zones in cauline leaves and siliques (PubMed:21673078). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013616284.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF957837 | 0.0 | JF957837.1 Brassica napus NAC5 mRNA, complete cds. | |||
GenBank | KC966759 | 0.0 | KC966759.1 Brassica napus NAC transcription factor 83 (NAC83.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013616284.1 | 0.0 | PREDICTED: NAC domain-containing protein 83-like | ||||
Swissprot | Q9FY93 | 1e-146 | NAC83_ARATH; NAC domain-containing protein 83 | ||||
TrEMBL | A0A0D3AIS9 | 0.0 | A0A0D3AIS9_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6D9R5 | 0.0 | A0A3P6D9R5_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g011120.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1806 | 27 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 1e-136 | NAC domain containing protein 83 |
Publications ? help Back to Top | |||
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