PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013616253.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HB-other
Protein Properties Length: 343aa    MW: 37645.5 Da    PI: 8.5854
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013616253.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox16.61.3e-051674955
                    HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
        Homeobox  9 keqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                      +++e+e++ ++  +  p +++ e LA+k            ++ +q+ +WFqNrR+  
  XP_013616253.1 16 LAEVTEMEAVLKQhnTAMPGRDTLEALADKFsdtverkgktVVQFKQIWNWFQNRRYAL 74
                    556677777777544778999999999999999999999888999***********965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.54E-9478IPR009057Homeodomain-like
PROSITE profilePS500718.584577IPR001356Homeobox domain
SMARTSM003890.0026781IPR001356Homeobox domain
CDDcd000867.88E-41375No hitNo description
Gene3DG3DSA:1.10.10.602.7E-71380IPR009057Homeodomain-like
PfamPF167194.4E-41140268IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MGRPPSNGSP AFRFNLAEVT EMEAVLKQHN TAMPGRDTLE ALADKFSDTV ERKGKTVVQF  60
KQIWNWFQNR RYALRASRNK APGKLSVSSM PRGLDPTNPT RSVLPPSTGP KPTHMIGNLS  120
GMTPAPPAPG VMRSGSDNSY LEFEAKSARD GAWYDVQAFL AHRNLEIGDP EVQVRFAGFE  180
VEEDEWINVK RHVRQRSLPC EASECVAVLA GDLVLCFQEG KDQALYFDAI VLDAQRRRHD  240
VRGCRCRFLV RYSHDQSEQE IVPLRKICRR PETDYRLQQL HSAANDFANS KPAPDAAAKA  300
PLPPSTASAP IVPPDVKDPS LSAASATSAQ PSSNAATVPT GSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A4e-451412724134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B4e-451412724134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A4e-451412724134SHH1 SAWADEE
4iur_B4e-451412724134SHH1 SAWADEE
4iut_A4e-451412724134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B4e-451412724134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A4e-451412724134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B4e-451412724134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A4e-451412724134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B4e-451412724134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bol.109650.0leaf
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013616253.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0930420.0AY093042.1 Arabidopsis thaliana unknown protein (At3g18380) mRNA, complete cds.
GenBankBT0034280.0BT003428.1 Arabidopsis thaliana unknown protein (At3g18380) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013616253.10.0PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
RefseqXP_013730725.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
RefseqXP_013730726.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2
SwissprotQ8RWJ70.0SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A3P6F3U30.0A0A3P6F3U3_BRAOL; Uncharacterized protein
STRINGBra037587.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73992437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.30.0sequence-specific DNA binding transcription factors;sequence-specific DNA binding