PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013615939.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 298aa MW: 31725 Da PI: 6.2569

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013615939.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.2	7.2e-09	143	187	5	54
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P+ + K + a++ + v+Y+k L XP_013615939.1 143 HSIAERLRRERIAERIRALQELVPTvN------KTDRAAMIDEIVDYVKFL 187 99*********************55......9************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.31E-14	136	197	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.802	138	187	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.3E-14	140	197	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.7E-6	143	187	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.0E-10	144	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MAHENLSDQT PSDDFFDQIL GLPSFPASSA AVLSGGLGGG GGAPPMMLQL GSGEEGSGFH 60 SQMFPLGLSL EQGKGPGFRR PEGGGGLGSG KRFSDDVLDH PSSSMKPVFP GQPMQQPAPS 120 APHQPTSIRP RVRARRGQAT DPHSIAERLR RERIAERIRA LQELVPTVNK TDRAAMIDEI 180 VDYVKFLRLQ VKVLSMSRLG GAGAVAPLVT DMPLSSSVED EGSEGGRTPQ AAWEKWSNDG 240 TERQVAKLME ENVGAAMQLL QSKALCMMPI SLAMAIYHSQ PPDTSSSVVK PETNPPPP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	147	152	RLRRER

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Required for ovule fertilization. {ECO:0000269\|PubMed:15634699}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013615939.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352765	0.0	AK352765.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-G01.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013615939.1	0.0	PREDICTED: transcription factor UNE12-like isoform X1
Refseq	XP_013722748.1	0.0	transcription factor UNE12
Swissprot	O22768	1e-169	UNE12_ARATH; Transcription factor UNE12
TrEMBL	A0A0D3ASF1	0.0	A0A0D3ASF1_BRAOL; Uncharacterized protein
STRING	Bo2g100750.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1611	28	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02590.2	1e-127	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]