PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013615754.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 121aa MW: 13881.9 Da PI: 10.6721 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.4 | 8e-11 | 16 | 63 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + +E++RR ++++ ++eL +llP+ + + l + L +A +YIk+Lq XP_013615754.1 16 RKTIEKNRRIQMKNLYSELNSLLPQT---SRESLALPDQLDEAANYIKKLQ 63 5789*********************9...8999*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.969 | 11 | 62 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.0E-9 | 16 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.19E-10 | 16 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0027 | 17 | 68 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.5E-7 | 17 | 63 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 121 aa Download sequence Send to blast |
MDQSHLNASQ SRSVDRKTIE KNRRIQMKNL YSELNSLLPQ TSRESLALPD QLDEAANYIK 60 KLQVNVEKKR ERKRKLLATT AFEKLNSTGS SSMSSSVDLS MPRRLPRIEI QETGPVLHIF 120 L |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 66 | 75 | EKKRERKRKL |
2 | 68 | 75 | KRERKRKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013615754.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013590924.1 | 1e-82 | PREDICTED: transcription factor bHLH36-like | ||||
Refseq | XP_013615754.1 | 6e-83 | PREDICTED: uncharacterized protein LOC106322156, partial | ||||
Refseq | XP_013669852.1 | 1e-82 | transcription factor bHLH162-like | ||||
Swissprot | F4JIJ7 | 2e-51 | BH162_ARATH; Transcription factor bHLH162 | ||||
TrEMBL | A0A0D2ZYB6 | 1e-81 | A0A0D2ZYB6_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A0D3A4P6 | 3e-81 | A0A0D3A4P6_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3N6RWG8 | 3e-81 | A0A3N6RWG8_BRACR; Uncharacterized protein | ||||
STRING | Bo08313s010.1 | 2e-82 | (Brassica oleracea) | ||||
STRING | Bo1g022660.1 | 5e-82 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1278 | 25 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 1e-45 | bHLH family protein |
Publications ? help Back to Top | |||
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