PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013615275.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 166aa MW: 19219.1 Da PI: 8.3052 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 34.9 | 4.4e-11 | 5 | 61 | 2 | 62 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFs 62 p+Gfr +P deel+++y k+++ g++ l++ i+e++iy++eP Lp+++ ke y F XP_013615275.1 5 PVGFRSSPMDEELINFYQKNRILGNSWLLDDSISEINIYSYEPAFLPEEA----KEDYTFW 61 89************************999999***************543....3333332 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.23E-12 | 3 | 69 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MKNYPVGFRS SPMDEELINF YQKNRILGNS WLLDDSISEI NIYSYEPAFL PEEAKEDYTF 60 WVLESYDRKI KDKGTLDLLF PRESSPVRDS PNFIPSNPPP PLGRHSSLPR LTVRSAVTSV 120 RSFNPFPSLR NTKVFVFALF LARVWFFPCS CSPLCSMLQF KVFTCL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013615275.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013615275.1 | 1e-118 | PREDICTED: uncharacterized protein LOC106321572 isoform X1 | ||||
TrEMBL | A0A0D3EEG9 | 7e-39 | A0A0D3EEG9_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g156240.1 | 1e-39 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01550.1 | 2e-15 | NAC domain containing protein 69 |