PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013615089.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 827aa    MW: 92055.4 Da    PI: 5.6434
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013615089.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.28.7e-21112167156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t+ q++e+e+lF++n++p+ ++r++L+++lgL+ rqVk+WFqNrR+++k
  XP_013615089.1 112 KKRYHRHTNRQIQEMEALFKQNPHPDDKQRQRLSHELGLKPRQVKFWFQNRRTQMK 167
                     688999***********************************************998 PP
2START1411.2e-443215492206
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS................SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv...............dsgealrasgvvdmvlallveellddkeqWdetla.... 77 
                     +a ++  el k+ + eep+W k  + ++g e l   ee+                 ++ ea++a +vv+m++ +lv  +l+   +W+e++     
  XP_013615089.1 321 IAVSCVHELTKMCYTEEPLWIKKKSDKMGGEILCLNEEEYKrlfawtmenhnnkgdFRREASKANAVVIMNSITLVDAFLNAD-KWSEMFCsiva 414
                     7889999***************99666666544333222223588888888899999**************************.******99999 PP

                     EEEEEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEE CS
           START  78 kaetlevissg.....galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskv 164
                     +a+t++ issg     g l lm+aelq+lsplvp R+ +f+Ry +q  + g w+ivd  +d+ q+ +  +++  +  + pSg++i++++ng+s+v
  XP_013615089.1 415 RAKTVQIISSGvsgasGSLLLMYAELQVLSPLVPtREAYFLRYVEQnVENGNWAIVDFPIDQIQPLSAnTPHEYK--RKPSGCIIQDMPNGYSQV 507
                     **********************************************99***************999866444444..7***************** PP

                     EEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 165 twvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                      wvehv++++r++h+++   vk+g+a+ga++w+  l+rqce+
  XP_013615089.1 508 KWVEHVEVNERHVHEIFAEYVKTGIAFGASRWLDVLERQCER 549
                     ****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.89E-20104170IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.6E-21106175IPR009057Homeodomain-like
PROSITE profilePS5007117.75109169IPR001356Homeobox domain
SMARTSM003897.3E-19110173IPR001356Homeobox domain
CDDcd000862.09E-19112170No hitNo description
PfamPF000462.8E-18112167IPR001356Homeobox domain
PROSITE patternPS000270144167IPR017970Homeobox, conserved site
PROSITE profilePS5084842.956311552IPR002913START domain
SuperFamilySSF559612.61E-28312551No hitNo description
CDDcd088752.11E-102315548No hitNo description
SMARTSM002341.6E-25320549IPR002913START domain
PfamPF018522.5E-37321549IPR002913START domain
SuperFamilySSF559611.28E-11586800No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 827 aa     Download sequence    Send to blast
MLTMGEENVM TTDNRFASPQ PPSSSPATIQ SPNFNFNPFN SFSSIIPKEE HGMMSMSMLM  60
MMGDGGVEEM MENGSAGGSF GSGSEQAEDP KSGNEFDVAE LQDEEQPPPA KKKRYHRHTN  120
RQIQEMEALF KQNPHPDDKQ RQRLSHELGL KPRQVKFWFQ NRRTQMKAQQ DRAENVMLRA  180
DNDNLKAENS HLQAELRCLS CPSCGGPTVL GDIPFNELHI ENCRLREELD RLCSIASRYT  240
GRPMESSQPM INPPLEVQHH QPSLELDMSV YAGNFQEQPC SDMMLLPPQD TACYLPVQTN  300
NNSNGYNMLL ADEEKVIAME IAVSCVHELT KMCYTEEPLW IKKKSDKMGG EILCLNEEEY  360
KRLFAWTMEN HNNKGDFRRE ASKANAVVIM NSITLVDAFL NADKWSEMFC SIVARAKTVQ  420
IISSGVSGAS GSLLLMYAEL QVLSPLVPTR EAYFLRYVEQ NVENGNWAIV DFPIDQIQPL  480
SANTPHEYKR KPSGCIIQDM PNGYSQVKWV EHVEVNERHV HEIFAEYVKT GIAFGASRWL  540
DVLERQCERM ASLMARNISD LGVIRSAEGR RNMMRLSQRM VKTFCVNIST SYGQSWTALS  600
ETTKDTVRIT TRKVCEPGQP TGVVLAAVST TCLPFSHAKV FDLLRHQHHH SLLEVLFSGS  660
SPHEVAHIAN GSHPGNCISL LRINVSSNSW HNVDLMLQES CIDNSGSLIV YSSVDVDYIQ  720
HAMNGEDPSG IPLLPLGFSV VPVNYPDQVE GVSVNSHPLP SCLLTVGIQV LASNVPTAKP  780
NLSTVTTINN HLSSIVNQIT SVLSSTIPPA IASSSAGDDA VAKQEVI
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in shoot apical meristem (SAM) with higher levels in L1 cells and the epidermal layer of young leaves. Expressed in the L1 of apical inflorescence meristems, early flower primordia, carpel and stamen filament epidermis, ovule primordia, nucellus and chalaze. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013615089.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892450.0AC189245.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB017K02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013615089.10.0PREDICTED: homeobox-leucine zipper protein HDG5-like
SwissprotQ9FJS20.0HDG5_ARATH; Homeobox-leucine zipper protein HDG5
TrEMBLA0A0D2ZV280.0A0A0D2ZV28_BRAOL; Uncharacterized protein
STRINGBo01466s010.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43562548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Lung SC, et al.
    Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors.
    New Phytol., 2018. 218(1): p. 183-200
    [PMID:29288621]