PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013614667.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family FAR1
Protein Properties Length: 608aa    MW: 70734.3 Da    PI: 5.7304
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013614667.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.71.2e-20103186290
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                      Y++Y+ + GF vr+++++++  n++ ++  +vCskeg r+e k +   ++ +r++tr+gCka++   ++++g+++++++e +HnH+l+
  XP_013614667.1 103 AYRKYGGNHGFGVRRQRTSRK--NKKLVRMVYVCSKEGLRQEPKVR---KSYSRPTTRCGCKARMSCYLQSNGRYKIMTFEPNHNHDLV 186
                     59************9986665..9999**************99766...999***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-17103186IPR004330FAR1 DNA binding domain
PfamPF105513.2E-36308402IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MESRHSSDQK TVSATQDEFS TQISGEISLL NQNLDDFLAE EDASFNDDDV SVSDFDEEAG  60
IGNKDDYIQT EDADALEANN ENQNKYELCS GMDFSYDESA YNAYRKYGGN HGFGVRRQRT  120
SRKNKKLVRM VYVCSKEGLR QEPKVRKSYS RPTTRCGCKA RMSCYLQSNG RYKIMTFEPN  180
HNHDLVRTPM KHLMKSNRAI SISQKQHADD ADMSGISAKA TIEMMSREVG GQANLGFIDK  240
DMRNYIYRKR MAAMEKGDAG AVLEYFQKKK EDDSSFFYSM QLDEDDMITN IFWADDRSIS  300
DYNLFGDVVC FDTTYKTNEY DRPFAPFVGV NHHKQTIVFG AALLYDETTE SFEWLFQTFL  360
GAMSGKQPQT ILTDQCAAMA NAIGKVFPET KHRLCVWHNY QNAIKRLSCV FHGPNHFATD  420
FGKCVYDHEN EVEWLSAWSK MLEKHGLTDN KWLNDLFELR EKWARIYGRQ TFTADMMSTQ  480
RSENFGKCVY DHENEVEWLS AWSEMLEKHG LTENKWLKDL FELREKWARS GYNMLRFFKH  540
YERVLDDRRF KELTADFSMM HTSPVLSAPV EMLQHALDVY TPEVFTLFQK EYIAIGDYVA  600
KRFNKSEM
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013614667.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013614667.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like, partial
TrEMBLA0A0D2ZTK80.0A0A0D2ZTK8_BRAOL; Uncharacterized protein
STRINGBo01097s010.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-104FAR1-related sequence 5