PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013614625.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 245aa MW: 28478.4 Da PI: 6.6479 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 101.8 | 3.8e-32 | 37 | 142 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k ltpsdv+k++rlv+pk++ae++ + + e++ l +ede+g+ W+++++y+++s++yvltkGW+++vk+++L++gD+v+F++++ XP_013614625.1 37 FEKPLTPSDVGKLNRLVIPKQHAERYfplaaaavDAV-EKGLLLCFEDEEGKPWRFRYSYWNSSQSYVLTKGWSRYVKEKQLDAGDVVLFHRHRV 130 99*****************************997555.57789************************************************8777 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 ++++++++++r+ XP_013614625.1 131 DGGRFFIGWRRR 142 9*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.5E-40 | 30 | 150 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.83E-30 | 34 | 142 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.20E-27 | 36 | 141 | No hit | No description |
SMART | SM01019 | 8.5E-24 | 37 | 143 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.071 | 37 | 143 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.0E-29 | 37 | 142 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MSINQYSSEF HYHSLMWQQQ QQHHQQNEVV EEKEALFEKP LTPSDVGKLN RLVIPKQHAE 60 RYFPLAAAAV DAVEKGLLLC FEDEEGKPWR FRYSYWNSSQ SYVLTKGWSR YVKEKQLDAG 120 DVVLFHRHRV DGGRFFIGWR RRGDSSSSSD SYRHLQSNAS LQYYPHAGAQ AVENQRGNSK 180 TLRLFGVNME CQIDSDWSEP STPDGFTTYS TNHDQFPIYP EHYPPPCYMD VSFTGDVHQT 240 RSQQG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 1e-48 | 30 | 142 | 1 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 1e-48 | 30 | 142 | 1 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013614625.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK117587 | 0.0 | AK117587.1 Arabidopsis thaliana At2g36080 mRNA for putative RAV2-like DNA binding protein, complete cds, clone: RAFL17-23-G02. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013614625.1 | 0.0 | PREDICTED: B3 domain-containing protein At2g36080 | ||||
Swissprot | Q8GYJ2 | 1e-146 | Y2608_ARATH; B3 domain-containing protein At2g36080 | ||||
TrEMBL | A0A0D2ZTH0 | 0.0 | A0A0D2ZTH0_BRAOL; Uncharacterized protein | ||||
STRING | Bo01079s020.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1220 | 28 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36080.1 | 1e-135 | B3 family protein |
Publications ? help Back to Top | |||
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