PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013614549.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | HB-other | ||||||||
Protein Properties | Length: 103aa MW: 11403.8 Da PI: 7.8722 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 25.3 | 2.6e-08 | 65 | 102 | 2 | 39 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgL 39 rk+ ++t+eq + Le+ F++n++++ +++e LAk+l L XP_013614549.1 65 RKKLRLTREQSRLLEDSFRQNHTLNPKQKEALAKHLML 102 78889******************************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-8 | 47 | 102 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.67E-7 | 48 | 102 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.43E-6 | 64 | 102 | No hit | No description |
Pfam | PF00046 | 1.2E-5 | 65 | 102 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 103 aa Download sequence Send to blast |
MAILPENSSH LDLTISVPGF SSSRPSVSDE GSGGGREQLK LDMNQLPSSS EDNEELSHGG 60 SAPPRKKLRL TREQSRLLED SFRQNHTLNP KQKEALAKHL MLR |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013614549.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK353448 | 1e-102 | AK353448.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-26-G16. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013614549.1 | 3e-68 | PREDICTED: homeobox-leucine zipper protein ATHB-17-like, partial | ||||
Swissprot | Q8S9N6 | 4e-53 | ATB17_ARATH; Homeobox-leucine zipper protein ATHB-17 | ||||
TrEMBL | A0A3P6EPP6 | 2e-65 | A0A3P6EPP6_BRAOL; Uncharacterized protein | ||||
STRING | Bra024888.1-P | 9e-62 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4890 | 27 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G01430.1 | 2e-55 | homeobox-leucine zipper protein 17 |
Publications ? help Back to Top | |||
---|---|---|---|
|