PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013614513.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family AP2
Protein Properties Length: 428aa    MW: 47235 Da    PI: 8.9095
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013614513.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.27.6e-17113162155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ +++g
  XP_013614513.1 113 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAVRFRG 162
                     78*******************......55**********************99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-8113162IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-15113171IPR016177DNA-binding domain
SMARTSM003803.9E-30114176IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-16114170IPR001471AP2/ERF domain
PROSITE profilePS5103217.293114170IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MMLDLNLDVV STQMDESVTS NSSVVNAEAS SCIDGEEELC STRAAVKFQF EILKGRGREE  60
EDRTTKEFFP VAQSSRSSVD ISFQRGTQGG DFVQPPPAQP VKKSRRGPRS KSSQYRGVTF  120
YRRTGRWESH IWDCGKQVYL GGFDTAHAAA RAYDRAAVRF RGLEADINFV ISDYEEDLKQ  180
MAHLSKEEVV QVLRRQSSGF SRSNSRYQGV SLQKIGGWRG TQMKQFNGNM TVASLIEPHA  240
SRIIPEAANV KLDLSLGISL SLGDGPKQKD KTPNSMMENH MAAATCDSPF NLLKRGSDHL  300
INRHVLHPSA FFSPMERTPE KGFMSPPPQS FLTRTLQAQD QFSGVTATTA IASPLYSNAA  360
SSGFSPSATP PPSSSSTATL HPSQPFLNLN IPGLYVIHPS DSPSQQHHPH LMNRSQPPPP  420
YKRTCNIE
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013614513.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2347371e-160AC234737.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH010D15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013614513.10.0PREDICTED: AP2-like ethylene-responsive transcription factor TOE2 isoform X3
SwissprotQ9LVG20.0TOE2_ARATH; AP2-like ethylene-responsive transcription factor TOE2
TrEMBLA0A3N6PUN70.0A0A3N6PUN7_BRACR; Uncharacterized protein
STRINGBo2g025090.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60120.11e-158target of early activation tagged (EAT) 2