PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013614506.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | AP2 | ||||||||
Protein Properties | Length: 440aa MW: 48775.5 Da PI: 8.4493 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.1 | 7.9e-17 | 113 | 162 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ +++g XP_013614506.1 113 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAVRFRG 162 78*******************......55**********************99997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.55E-15 | 113 | 171 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.2E-8 | 113 | 162 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.9E-30 | 114 | 176 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-16 | 114 | 170 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.293 | 114 | 170 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 440 aa Download sequence Send to blast |
MMLDLNLDVV STQMDESVTS NSSVVNAEAS SCIDGEEELC STRAAVKFQF EILKGRGREE 60 EDRTTKEFFP VAQSSRSSVD ISFQRGTQGG DFVQPPPAQP VKKSRRGPRS KSSQYRGVTF 120 YRRTGRWESH IWDCGKQVYL GGFDTAHAAA RAYDRAAVRF RGLEADINFV ISDYEEDLKQ 180 MAHLSKEEVV QVLRRQSSGF SRSNSRYQGV SLQKIGGWRG TQMKQFNGNI DYYDGSYDYG 240 IRTVASLIEP HASRIIPEAA NVKLDLSLGI SLSLGDGPKQ KDKTPNSMME NHMAAATCDS 300 PFNLLKRGSD HLINRHVLHP SAFFSPMERT PEKGFMSPPP QSFLTRTLQA QDQFSGVTAT 360 TAIASPLYSN AASSGFSPSA TPPPSSSSTA TLHPSQPFLN LNIPGLYVIH PSDYASQQHH 420 HHLMNRSQPP PPYKRTCNIE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013614506.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013614506.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor TOE2 isoform X2 | ||||
Swissprot | Q9LVG2 | 0.0 | TOE2_ARATH; AP2-like ethylene-responsive transcription factor TOE2 | ||||
TrEMBL | A0A0D3AKT3 | 0.0 | A0A0D3AKT3_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g025090.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60120.1 | 1e-160 | target of early activation tagged (EAT) 2 |