PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013614150.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Protein Properties

Length: 1195aa MW: 133979 Da PI: 5.0722

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013614150.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	40.3	5.8e-13	84	184	2	99
EEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 +k lt+sd l + ++ k+ + ++ + ++ l+lede+g+ W ++++y k s+ y +t+ W+++vk+++L gDfv ++++++++ XP_013614150.1 84 EKCLTTSDDLHRLVVTANKDAC-KYfplatvfR-S--TDNFLQLEDEEGKPWMFEFSYLKVSQIYEFTEAWSSYVKEKQLGIGDFVFIQRHRTDS 174 5778888888776555555555.6667776532.2..34469*********************************************988899 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +l ++++r+ XP_013614150.1 175 SRLSIGFRRR 184 99999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.3E-16	76	183	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	8.83E-10	79	180	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.73E-9	82	183	No hit	No description
SMART	SM01019	0.0013	83	185	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.4E-11	84	185	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	9.488	121	185	IPR003340	B3 DNA binding domain
SMART	SM00255	0.0049	310	447	IPR000157	Toll/interleukin-1 receptor homology (TIR) domain
Pfam	PF01582	6.2E-18	322	476	IPR000157	Toll/interleukin-1 receptor homology (TIR) domain
SuperFamily	SSF52200	3.14E-11	325	444	IPR000157	Toll/interleukin-1 receptor homology (TIR) domain
PROSITE profile	PS50104	9.204	361	447	IPR000157	Toll/interleukin-1 receptor homology (TIR) domain
SuperFamily	SSF52540	1.23E-39	485	728	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Pfam	PF00931	4.5E-17	492	691	IPR002182	NB-ARC
Gene3D	G3DSA:3.40.50.300	1.5E-6	499	636	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PRINTS	PR00364	9.5E-20	502	517	No hit	No description
PRINTS	PR00364	9.5E-20	578	592	No hit	No description
PRINTS	PR00364	9.5E-20	669	683	No hit	No description
SuperFamily	SSF52058	1.36E-29	831	1053	IPR032675	Leucine-rich repeat domain, L domain-like
Gene3D	G3DSA:3.80.10.10	1.6E-24	832	1051	IPR032675	Leucine-rich repeat domain, L domain-like
Pfam	PF07725	4.5E-10	892	910	IPR011713	Leucine-rich repeat 3
PRINTS	PR00364	9.5E-20	982	998	No hit	No description
PROSITE profile	PS50103	11.009	1061	1089	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007165	Biological Process	signal transduction
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding
GO:0043531	Molecular Function	ADP binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1195 aa Download sequence Send to blast
MDEDDKEYWE ELLEFNRQRP PSGSTADDAG EGINAASFKE MDEDDKENPF SSPLVLNEHL 60 KKTQIGDEKK LNIPAGQQQH NLCEKCLTTS DDLHRLVVTA NKDACKYFPL ATVFRSTDNF 120 LQLEDEEGKP WMFEFSYLKV SQIYEFTEAW SSYVKEKQLG IGDFVFIQRH RTDSSRLSIG 180 FRRRNNSLLY ENPAPLTMSI GDGGSALQSD NFPCHDPAPS TISFMDGDAP LQLTPPFQSD 240 NFPCHDPAPA ALQLDPCQDT FPCHDLAPPT ISFGDGGAAP RDCIYLLPDS VTSSETLEQP 300 RVSGYSITGV DHILVISCGY NQSSEERYFI SYIFNELRLR GFAPLGYDLS RSPVNGNQDL 360 LDKSQLGIII FSMNYVSSRE CMDGFVALMD HSKANELMLF PVFFEVEFCN VKDQAGSFEK 420 AFAQFENSVQ ASQVLKWKAA VKELTSTDRY HQYKKGDEVM LAKNIVRDVQ VNSKTGSNLT 480 ESLQLSYILS LLNSSQSSAP HIVGLWGMAG IGKTTFSREI FRTQGERYDV CYFLPDFHQL 540 CQTKGLNPLR EEFLSKIFGE EKVFIDPCGT KLSFTRDRFR DKKVLIVLDG VSNARDAEVL 600 VGGFGWFSGG HTIILTSRNR QVLVKCNAKE IYEIKKLSES DSIRLCRQFA TEKNWKVRMS 660 LIEELVNYAS GNPLALRALC SSIQKQCISD EEEHLSILHH HPPIEIRDAF GGIFRELDDN 720 EKNTFLDLAC FFKGENKDHV VNILDGCGFL TDLGISGLID ESLISLVDNR IEMPNIFQDM 780 GRFVVRQEHE EAGKRSRLSD SSDIVDVLTN NSGTEIIEGI FLNASGLKLK LSSNVFEEMD 840 RLRLLKLHYP TSENDCKVSL PEGLLSLPDE LRLLHWERYP LESLPGNFNP ENLVELNMPY 900 SNLTKLWEGT ESLEMLKRII LSHSRQLTDF SWLSMATNLE HIDLEGCTSL VEVNSSSILH 960 HRKLSFLSLK DCSHLRIIPS TAHLESLEVL NLSGCSELEH LEDFSPNLTK IYLAGTAIKE 1020 IPSSIVALTR LVTLDVGNCN RLQHLPPEIN LKAVVGFTPS QPGQPVCTSY FHTGICSKGP 1080 ACSSDHPTLS THKNTSSIAS ETQVHVELIR ALTHENPSSN NLEEVSTKKP RIHRTTSFVT 1140 SGTLDLNQQE IGFSFFNQPE SSSPLGASLS EFSRGGRSNK VFQIFGVSVI CKPNN

Sequence ? help Back to Top

Protein Sequence Length: 1195 aa Download sequence Send to blast

MDEDDKEYWE ELLEFNRQRP PSGSTADDAG EGINAASFKE MDEDDKENPF SSPLVLNEHL  60
KKTQIGDEKK LNIPAGQQQH NLCEKCLTTS DDLHRLVVTA NKDACKYFPL ATVFRSTDNF  120
LQLEDEEGKP WMFEFSYLKV SQIYEFTEAW SSYVKEKQLG IGDFVFIQRH RTDSSRLSIG  180
FRRRNNSLLY ENPAPLTMSI GDGGSALQSD NFPCHDPAPS TISFMDGDAP LQLTPPFQSD  240
NFPCHDPAPA ALQLDPCQDT FPCHDLAPPT ISFGDGGAAP RDCIYLLPDS VTSSETLEQP  300
RVSGYSITGV DHILVISCGY NQSSEERYFI SYIFNELRLR GFAPLGYDLS RSPVNGNQDL  360
LDKSQLGIII FSMNYVSSRE CMDGFVALMD HSKANELMLF PVFFEVEFCN VKDQAGSFEK  420
AFAQFENSVQ ASQVLKWKAA VKELTSTDRY HQYKKGDEVM LAKNIVRDVQ VNSKTGSNLT  480
ESLQLSYILS LLNSSQSSAP HIVGLWGMAG IGKTTFSREI FRTQGERYDV CYFLPDFHQL  540
CQTKGLNPLR EEFLSKIFGE EKVFIDPCGT KLSFTRDRFR DKKVLIVLDG VSNARDAEVL  600
VGGFGWFSGG HTIILTSRNR QVLVKCNAKE IYEIKKLSES DSIRLCRQFA TEKNWKVRMS  660
LIEELVNYAS GNPLALRALC SSIQKQCISD EEEHLSILHH HPPIEIRDAF GGIFRELDDN  720
EKNTFLDLAC FFKGENKDHV VNILDGCGFL TDLGISGLID ESLISLVDNR IEMPNIFQDM  780
GRFVVRQEHE EAGKRSRLSD SSDIVDVLTN NSGTEIIEGI FLNASGLKLK LSSNVFEEMD  840
RLRLLKLHYP TSENDCKVSL PEGLLSLPDE LRLLHWERYP LESLPGNFNP ENLVELNMPY  900
SNLTKLWEGT ESLEMLKRII LSHSRQLTDF SWLSMATNLE HIDLEGCTSL VEVNSSSILH  960
HRKLSFLSLK DCSHLRIIPS TAHLESLEVL NLSGCSELEH LEDFSPNLTK IYLAGTAIKE  1020
IPSSIVALTR LVTLDVGNCN RLQHLPPEIN LKAVVGFTPS QPGQPVCTSY FHTGICSKGP  1080
ACSSDHPTLS THKNTSSIAS ETQVHVELIR ALTHENPSSN NLEEVSTKKP RIHRTTSFVT  1140
SGTLDLNQQE IGFSFFNQPE SSSPLGASLS EFSRGGRSNK VFQIFGVSVI CKPNN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	2e-14	79	184	4	113	B3 domain-containing transcription factor NGA1
5os9_B	2e-14	79	184	4	113	B3 domain-containing transcription factor NGA1
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Functional Description ? help Back to Top
Source	Description
UniProt	Disease resistance protein that cooperates with RPP2B to confer resistance to Hyaloperonospora parasitica isolate Cala2. {ECO:0000269\|PubMed:15165183}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013614150.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013614150.1	0.0	PREDICTED: probable WRKY transcription factor 19 isoform X2
Swissprot	F4JT78	0.0	RPP2A_ARATH; Disease resistance protein RPP2A
TrEMBL	A0A0D2ZRZ9	0.0	A0A0D2ZRZ9_BRAOL; Uncharacterized protein
STRING	Bo00889s060.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12020.1	1e-141	WRKY family protein

Publications ? help Back to Top
Meyers BC,Morgante M,Michelmore RW TIR-X and TIR-NBS proteins: two new families related to disease resistance TIR-NBS-LRR proteins encoded in Arabidopsis and other plant genomes. Plant J., 2002. 32(1): p. 77-92 [PMID:12366802] Sinapidou E, et al. Two TIR:NB:LRR genes are required to specify resistance to Peronospora parasitica isolate Cala2 in Arabidopsis. Plant J., 2004. 38(6): p. 898-909 [PMID:15165183] Kempema LA,Cui X,Holzer FM,Walling LL Arabidopsis transcriptome changes in response to phloem-feeding silverleaf whitefly nymphs. Similarities and distinctions in responses to aphids. Plant Physiol., 2007. 143(2): p. 849-65 [PMID:17189325]