PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013614049.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 391aa MW: 44315.7 Da PI: 6.0874

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013614049.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	76.2	7.5e-24	31	111	50	128
NAM 50 kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 k+++++ wyfFs+++ ++a+++ ++r+t sgyWkatg d+++++ +g ++g+kktLv+y+gr p+g+ t Wv+hey++ XP_013614049.1 31 KLESKDLVWYFFSPKEYTSAKKNVTKRTTPSGYWKATGVDRKIKDWrgNGVEIGIKKTLVYYEGRVPNGVWTPWVLHEYHI 111 45567779*********************************998777888*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	30.651	1	129	IPR003441	NAC domain
SuperFamily	SSF101941	6.8E-37	4	129	IPR003441	NAC domain
Pfam	PF02365	6.2E-22	6	111	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005886	Cellular Component	plasma membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MENNLVGYRF SPTGEELINH YLKNKILALS KLESKDLVWY FFSPKEYTSA KKNVTKRTTP 60 SGYWKATGVD RKIKDWRGNG VEIGIKKTLV YYEGRVPNGV WTPWVLHEYH ITSLPLNQRT 120 YVICQVMYKG DDGDSLYGNN SNEPSSSMVS DSNPVKFINT SPEVVQKGQE DGMSMYDLLI 180 PLNQQVDLSP YDVFNPNKSF TDNSYYPQTP YGDDYWNRLL DYNGGNFEDV FRNQELTIQE 240 NQSNHRPKRP LTGIIVDDSC SDSDAESISA TSYRGTSSPG DSDGSVDEIL SLMKGSSKDI 300 LTSINGNTRE SRFTRRTIPS KQEVKEGKSK ANDDDASMDK KALSPIMKTE KKGWFITEEA 360 IQRNHKNAPY IYFMNMIIGL ILLVAVIGNI I

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MENNLVGYRF SPTGEELINH YLKNKILALS KLESKDLVWY FFSPKEYTSA KKNVTKRTTP  60
SGYWKATGVD RKIKDWRGNG VEIGIKKTLV YYEGRVPNGV WTPWVLHEYH ITSLPLNQRT  120
YVICQVMYKG DDGDSLYGNN SNEPSSSMVS DSNPVKFINT SPEVVQKGQE DGMSMYDLLI  180
PLNQQVDLSP YDVFNPNKSF TDNSYYPQTP YGDDYWNRLL DYNGGNFEDV FRNQELTIQE  240
NQSNHRPKRP LTGIIVDDSC SDSDAESISA TSYRGTSSPG DSDGSVDEIL SLMKGSSKDI  300
LTSINGNTRE SRFTRRTIPS KQEVKEGKSK ANDDDASMDK KALSPIMKTE KKGWFITEEA  360
IQRNHKNAPY IYFMNMIIGL ILLVAVIGNI I

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-18	7	111	18	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in salt stress response during seed germination and seedling growth. Binds the auxin-responsive IAA30 gene promoter and may serve as a molecular link that interconnects a developmental feedback loop of auxin signaling with a salt signal transduction pathway during seed germination (PubMed:21450938). {ECO:0000269\|PubMed:21450938}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00426	DAP	Transfer from AT4G01550	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013614049.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt stress and abscisic acid (ABA) in roots. {ECO:0000269\|PubMed:21450938}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013614049.1	0.0	PREDICTED: NAC domain-containing protein 69-like isoform X3
Swissprot	Q9M126	1e-146	NAC69_ARATH; NAC domain-containing protein 69
TrEMBL	A0A0D2ZRM6	0.0	A0A0D2ZRM6_BRAOL; Uncharacterized protein
STRING	Bo00853s060.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01550.1	1e-140	NAC domain containing protein 69

Publications ? help Back to Top
Liang M, et al. Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana. Traffic, 2015. 16(10): p. 1062-74 [PMID:26201836] He L, et al. Arabidopsis ANAC069 binds to C[A/G]CG[T/G] sequences to negatively regulate salt and osmotic stress tolerance. Plant Mol. Biol., 2017. 93(4-5): p. 369-387 [PMID:27975189]