PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013613777.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

S1Fa-like

Protein Properties

Length: 76aa MW: 8311.05 Da PI: 11.0921

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013613777.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	131.4	2.4e-41	9	76	3	70
S1FA 3 vakveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 +a++ea+GlnPGlivllv+gg+l+vflv+n +lyv+aqknlPP+kkkPvskkklkreklkqGv+vPGe XP_013613777.1 9 KAAAEARGLNPGLIVLLVIGGPLVVFLVANIVLYVHAQKNLPPKKKKPVSKKKLKREKLKQGVSVPGE 76 7899***************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04689	1.6E-36	12	76	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 76 aa Download sequence Send to blast
MDREDFARKA AAEARGLNPG LIVLLVIGGP LVVFLVANIV LYVHAQKNLP PKKKKPVSKK 60 KLKREKLKQG VSVPGE

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bol.1036	2e-71	leaf

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013613777.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189269	5e-66	AC189269.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB023B16, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013613777.1	2e-46	PREDICTED: DNA-binding protein S1FA1-like
Refseq	XP_013613779.1	2e-46	PREDICTED: DNA-binding protein S1FA1-like
Refseq	XP_013665799.1	2e-46	DNA-binding protein S1FA1-like
Refseq	XP_022568689.1	2e-46	DNA-binding protein S1FA1-like
Swissprot	Q42337	1e-18	S1FA2_ARATH; DNA-binding protein S1FA2
TrEMBL	A0A078H068	4e-42	A0A078H068_BRANA; BnaC04g27370D protein
STRING	Bo00703s150.1	1e-42	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2823	27	69