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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013613707.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ARR-B | ||||||||
Protein Properties | Length: 450aa MW: 51202.9 Da PI: 5.4346 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 68.4 | 1.2e-21 | 251 | 308 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilel...mkvkgLtlehvkSHLQkYRl 55 +pr+ Wt +L ++F+ea++ GG++kA Pk +l++ mk++gLt+++v SHLQkYRl XP_013613707.1 251 RPRMSWTGDLQQKFLEAIDIVGGPKKASPKVLLKClhdMKIEGLTRNNVSSHLQKYRL 308 59****************************998765559******************8 PP | |||||||
2 | Response_reg | 55.5 | 3.3e-19 | 36 | 141 | 1 | 107 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl+vd + + + +++++e+ y +v++ +d+eea++ l +++++++++ D mpg++Gl++l i ++ +lp++++++ ++ e + +a+ G XP_013613707.1 36 VLVVDSNLSTLLDMKEIMERCAY-HVTAYADAEEAIAFLtkCKHEINIVIWDYHMPGINGLQALAIIGSKM-DLPVVIMSGDDQTESVMNAMVHG 128 899********************.***************666677**********************6654.8********************** PP ESEEEESS--HHHH CS Response_reg 94 akdflsKpfdpeel 107 a +++Kp+ +e + XP_013613707.1 129 ACHYVMKPVRKE-I 141 ********7655.3 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 3.7E-28 | 32 | 157 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 1.7E-30 | 34 | 157 | No hit | No description |
SMART | SM00448 | 2.9E-16 | 34 | 145 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 34.732 | 35 | 150 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 2.7E-16 | 36 | 142 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.27E-16 | 37 | 145 | No hit | No description |
SuperFamily | SSF46689 | 4.48E-11 | 249 | 311 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.6E-19 | 250 | 312 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.6E-18 | 252 | 308 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 450 aa Download sequence Send to blast |
MSIGHITEDG DKALFLQQET SEINSPLIEF PPSTNVLVVD SNLSTLLDMK EIMERCAYHV 60 TAYADAEEAI AFLTKCKHEI NIVIWDYHMP GINGLQALAI IGSKMDLPVV IMSGDDQTES 120 VMNAMVHGAC HYVMKPVRKE IIATIWQHIV RKRMMSKPGL VPPVVVHDDC SKQERDDSVT 180 VDQDDSEQSI DKIEEKATKK RTMICIEETQ PMQSHLVKSN GSDQDDDDSR SVSNYNNEQK 240 IDKKKESYFK RPRMSWTGDL QQKFLEAIDI VGGPKKASPK VLLKCLHDMK IEGLTRNNVS 300 SHLQKYRLSL EENKIPQQFP ETGWSSLSRP SPFLGMNNGF IAPTSLRNGP AVYPVQDNQY 360 QNGYLAMNNN QLVTNNMPGF PYLDNDHHLQ QQHQQRQYQL SNQVMNCMMR KNEPQQAYNG 420 IGLTDLEPNI YPSLPYDPNE FLFDGYNFSN |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Detected in trichomes and siliques. {ECO:0000269|PubMed:15173562}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013613707.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013613707.1 | 0.0 | PREDICTED: putative two-component response regulator ARR19 | ||||
Swissprot | Q9M9B9 | 1e-134 | ARR19_ARATH; Putative two-component response regulator ARR19 | ||||
TrEMBL | A0A3P6F8J4 | 0.0 | A0A3P6F8J4_BRAOL; Uncharacterized protein | ||||
STRING | Bo00641s030.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13137 | 16 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49190.1 | 2e-71 | response regulator 19 |