PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013613626.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 281aa MW: 32279.8 Da PI: 9.8051

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013613626.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.1	3.1e-13	95	144	1	53
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 +r++h ++Er+RR+++N+ ++ L+ ++P + +s++ + a+i e +++Y+k+ XP_013613626.1 95 QRMNHIAVERNRRRQMNHFLSILKAMMPLS---YSQRSDQASIIEGTINYLKK 144 79**************************...****************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.83E-13	92	150	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.6E-10	92	148	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.01E-15	93	162	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.729	94	145	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.2E-11	95	144	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.1E-9	100	151	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF55021	7.21E-5	206	271	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MMFQHEYPYG FSLMETSSSY EVLDYKMIVG SPPNPISFAS SLATLSSSIA EQQSNSTDNL 60 YSLQARGGFG EEPPRKKRRR RRTRSEQMIE EKENQRMNHI AVERNRRRQM NHFLSILKAM 120 MPLSYSQRSD QASIIEGTIN YLKKQEQLLQ SFEAQLKPKK PNQPTNIFSD FFNFPQYSTA 180 IASSRRHHNG LAVVADVEVT MVEMHANIKV LTKTRPRLLL KMINEFDSLG LTIFHLNLTT 240 SNNMSLFTFS VKVDEACRLT TTANEVADAV HEVVSRIHKE H

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	74	80	RKKRRRR
2	75	81	KKRRRRR
3	76	81	KRRRRR
4	77	82	RRRRRT
5	95	106	RMNHIAVERNRR

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013613626.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013613626.1	0.0	PREDICTED: transcription factor bHLH99
Swissprot	Q9FKQ6	1e-107	BH099_ARATH; Transcription factor bHLH99
TrEMBL	A0A0D2ZQ38	0.0	A0A0D2ZQ38_BRAOL; Uncharacterized protein
STRING	Bo00615s100.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14959	16	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65320.1	1e-107	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]