PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013612891.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | GRAS | ||||||||
Protein Properties | Length: 495aa MW: 55676.6 Da PI: 7.0223 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 452.5 | 2.8e-138 | 125 | 495 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 + L++cA+a+s++dl +a++++++l+ ++s +g+p+qRl ay++e+L a+la+s+s++yk+l+ +++ s e l+++++++ev+P++kf+++ XP_013612891.1 125 RADLVSCAKAMSENDLMMANSMMEKLRLMVSVSGEPIQRLGAYLLEGLVAQLASSGSSIYKSLNRCPEP--ASNELLSYMHILYEVCPYFKFGYM 217 678************************************************************666665..49999******************* PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189 aN aI ea+++e+rvHiiDf+i+qG QW++L+qa+a+Rp+gpp +RiTg+++++s + l+ +g+rLak+A++++vpfefn v+ +++++ XP_013612891.1 218 SANGAIAEAMKNENRVHIIDFQIGQGSQWVTLIQAFAERPGGPPWIRITGIDDMASAyaRGGGLSIVGNRLAKLAKKFNVPFEFNS-VSVSVAEV 311 *****************************************************999899999************************.7999**** PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284 ++++L v++gEalaVn+++ lh+++desvs+e++rd++L++vk+lsPkvv++veqe+++n++ F+ rf+e+++yy a+f+s++++lpr++++ri+ XP_013612891.1 312 KPNNLGVRTGEALAVNFAFVLHHMPDESVSTENHRDRLLRMVKGLSPKVVTLVEQESNTNTAAFFPRFMETMDYYDAMFESIDVTLPRNHKQRIN 406 *********************************************************************************************** PP GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 vE+++l+r++vn++acega+r+erhe l+kWr r+++aGF+p+pls +++++k+llr+++++ yr+ee++g+l+lgW++r Lv+ +aW+ XP_013612891.1 407 VEQHCLARDVVNIIACEGADRVERHELLGKWRLRFGMAGFTPYPLSPLVNSTIKRLLRNYSDK-YRLEERDGALYLGWMKRDLVASCAWK 495 *************************************************************55.*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 68.693 | 98 | 476 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.7E-136 | 125 | 495 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 495 aa Download sequence Send to blast |
MYKHPRQEIE AYSLPPFEAN SVGKLRYIPV NNSRKRYCML EPSSSSPDST VLVSNNNNNS 60 THEDTSASCV TDDFNDKIKE LETAMMGPDC LDLALYYNDS FVSTPCQVTN SWRSTLEAVS 120 RRDLRADLVS CAKAMSENDL MMANSMMEKL RLMVSVSGEP IQRLGAYLLE GLVAQLASSG 180 SSIYKSLNRC PEPASNELLS YMHILYEVCP YFKFGYMSAN GAIAEAMKNE NRVHIIDFQI 240 GQGSQWVTLI QAFAERPGGP PWIRITGIDD MASAYARGGG LSIVGNRLAK LAKKFNVPFE 300 FNSVSVSVAE VKPNNLGVRT GEALAVNFAF VLHHMPDESV STENHRDRLL RMVKGLSPKV 360 VTLVEQESNT NTAAFFPRFM ETMDYYDAMF ESIDVTLPRN HKQRINVEQH CLARDVVNII 420 ACEGADRVER HELLGKWRLR FGMAGFTPYP LSPLVNSTIK RLLRNYSDKY RLEERDGALY 480 LGWMKRDLVA SCAWK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 3e-63 | 128 | 495 | 8 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013612891.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189305 | 0.0 | AC189305.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB031O20, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013612889.1 | 0.0 | PREDICTED: scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_013612890.1 | 0.0 | PREDICTED: scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_013612891.1 | 0.0 | PREDICTED: scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_013612892.1 | 0.0 | PREDICTED: scarecrow-like transcription factor PAT1 | ||||
Swissprot | Q9LDL7 | 0.0 | PAT1_ARATH; Scarecrow-like transcription factor PAT1 | ||||
TrEMBL | A0A0D3E0S1 | 0.0 | A0A0D3E0S1_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g009260.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 0.0 | GRAS family protein |
Publications ? help Back to Top | |||
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