PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013612533.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 286aa    MW: 32064.7 Da    PI: 4.2271
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013612533.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.95e-1516106194
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                     ffkv +p+d++    l +p +f  ++  + +   +k +t+++ +g +W++kl+  ++ ++++ + +GWk+ vk+ +Lk g+f+ F++dg++ f++
  XP_013612533.1  16 FFKVYLPNDSGD--DLEIPVSFN-SClpS-S--VPKSVTVTNINGHVWKLKLKKlSGDPEKFSMVDGWKRIVKDEDLKGGEFLAFEFDGSRLFNF 104
                     889997766665..59******8.66543.3..45569999***********666888888*************************999777755 PP

                     EE CS
              B3  93 vv 94 
                     +v
  XP_013612533.1 105 CV 106
                     54 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.9E-179109IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.8E-189111IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.11114110IPR003340B3 DNA binding domain
CDDcd100177.72E-1514107No hitNo description
SMARTSM010192.5E-1316110IPR003340B3 DNA binding domain
PfamPF023628.8E-1316106IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-7182283IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.04E-11182279IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MKKVSGDSSD GRLPKFFKVY LPNDSGDDLE IPVSFNSCLP SSVPKSVTVT NINGHVWKLK  60
LKKLSGDPEK FSMVDGWKRI VKDEDLKGGE FLAFEFDGSR LFNFCVYGQA TCKKLGKSAE  120
VEEDESDDDD DDDVIVIDDD DDDDDDDDEV DDEDVDVDVE ADDVDDGMEA DGDDDHRQLL  180
DDPDSPSFTV ILNPKKKSQL LIPSHIMKDY NLHFTERITI VDPLVPKFGT LERKIKLQDN  240
GCLFVKGFGS VFRRNNVKTT DTIICEVKKN GNDVAHILKV HIVRGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A5e-1461121104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013612533.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013612533.10.0PREDICTED: B3 domain-containing protein At5g60130-like isoform X1
RefseqXP_013713841.10.0B3 domain-containing protein At5g60130-like isoform X1
SwissprotQ9LVG16e-98Y5013_ARATH; B3 domain-containing protein At5g60130
TrEMBLA0A0D3ECZ61e-163A0A0D3ECZ6_BRAOL; Uncharacterized protein
STRINGBo9g141110.11e-164(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49471843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60142.16e-51B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]